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AT5G67250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.864
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1/ASK1-interacting protein 2
Curator
Summary (TAIR10)
Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.
Computational
Description (TAIR10)
SKP1/ASK1-interacting protein 2 (SKIP2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: VIER F-box proteine 2 (TAIR:AT3G50080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:22102eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB020742EMBL:AB025614EMBL:AF263378EMBL:AK226338
EMBL:AY056152EMBL:BT002473EMBL:BT008886EMBL:CP002688EnsemblPlants:AT5G67250EnsemblPlants:AT5G67250.1entrez:836860
Gene3D:3.80.10.10GeneID:836860Genevisible:Q9FE83GO:GO:0004842GO:GO:0005634GO:GO:0005737Gramene:AT5G67250.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF481HOGENOM:HOG000240905InParanoid:Q9FE83IntAct:Q9FE83InterPro:IPR001611InterPro:IPR001810
InterPro:IPR006553InterPro:IPR032675iPTMnet:Q9FE83KEGG:ath:AT5G67250MINT:MINT-8063266OMA:CARWKEVPaxDb:Q9FE83
Pfam:PF00646Pfam:PF13516Pfam:Q9FE83PhylomeDB:Q9FE83PRIDE:Q9FE83PRO:PR:Q9FE83ProteinModelPortal:Q9FE83
Proteomes:UP000006548RefSeq:NP_569047.1SMART:SM00367SMR:Q9FE83STRING:3702.AT5G67250.1SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT5G67250tair10-symbols:SKIP2tair10-symbols:VFB4UniGene:At.20927UniGene:At.48122UniPathway:UPA00143UniProt:Q9FE83
Coordinates (TAIR10) chr5:-:26831677..26833260
Molecular Weight (calculated) 57395.90 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.01
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)