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AT5G67240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : small RNA degrading nuclease 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:COG0847eggNOG:KOG2248EMBL:AB020742EMBL:AY080843EMBL:BT001977EMBL:CP002688
EnsemblPlants:AT5G67240EnsemblPlants:AT5G67240.1entrez:836859ExpressionAtlas:Q8RXK2Gene3D:3.30.420.10Gene3D:3.30.70.330GeneID:836859
Genevisible:Q8RXK2GO:GO:0000166GO:GO:0003723GO:GO:0004527GO:GO:0006351GO:GO:0006355GO:GO:0016592
hmmpanther:PTHR12801hmmpanther:PTHR12801:SF69HOGENOM:HOG000154279InParanoid:Q8RXK2IntAct:Q8RXK2InterPro:IPR012337InterPro:IPR012677
InterPro:IPR013520iPTMnet:Q8RXK2ncoils:CoilOMA:FLHKIPHPaxDb:Q8RXK2Pfam:Q8RXK2PhylomeDB:Q8RXK2
PRIDE:Q8RXK2PRO:PR:Q8RXK2ProteinModelPortal:Q8RXK2Proteomes:UP000006548RefSeq:NP_201525.2SMART:SM00479SMR:Q8RXK2
STRING:3702.AT5G67240.1SUPFAM:SSF53098SUPFAM:SSF54928TAIR:AT5G67240tair10-symbols:SDN3UniGene:At.28408UniGene:At.71151
UniProt:Q8RXK2
Coordinates (TAIR10) chr5:-:26824454..26828098
Molecular Weight (calculated) 87469.50 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.62
Length 782 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHKLATAEK KLLVDLVKLV QKRGLEGENG GWKEFLNVYD KKLGSSLSDP ARRSNDVLVA FLLTFKKKED LQLIARVMQC GANRELIEKF KQETPDKETP
101: EQRLVRLTIT HDDYPGNYTF PSYAEDWYVT ELGKKKSKVI KSTRMLSIDC EMVTCEDGSQ ALVRVGAVDR DLKVVLDKFV KPDKPVIDYK TDITGVTAED
201: LERATLSVAD IQKKLRRFLS VGTILVGHGL HNDLQVLRID HARVIDTSYV FEFVDAPKTQ RPSLNNLCKS VLGQEVRMDG AAHNCVHDAA AAMKLVLAAV
301: EKGAATLIQP TEEMMVAEKR RQEARQEAGK AQLFLHKIPH DVPSEELHGV LSGNFTLVVK PPKTGGYSTA VVDFSSPEEA NEAFENVEGD VAKDKSGLPQ
401: KKAVLKLSSG LAVSLFVRKM VQDDSPCEIS TSERARAEEN NVSSKRQKTE DETEETKEAT VNQREADKTK LFLHKIPHDV PSQELHGVLN GDFTLDVKPP
501: KRKGGYYNAV VDFNSPEEAN EAFENVEGDV VKDKTGLPQK MVVFKLSSGS GVSLYVRKMV HDDSPGEIST TKRARTEESN MSSKRQKTED ESEETKEANA
601: KQREADKTKL LLHKIPLNVP SQELKVVITG QFTLEVMPPK RKGRYYNAVV TFNSPEEANK AFEKVKGEAV KEKGGLAQKM VAFKLSSGSG ACLYVRKMVQ
701: DESEETKEAN ANHCEDDHLK EMEELKEKLK AMEFAISCEG HSKEIEELKQ KLNAKEHQIQ AQDKIIANLK MKLEKKQSKS RS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)