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AT5G67130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:22090eggNOG:ENOG410IKXEeggNOG:ENOG410Y3PHEMBL:AB020742EMBL:AY054674EMBL:AY081553EMBL:AY087841
EMBL:CP002688EnsemblPlants:AT5G67130EnsemblPlants:AT5G67130.1entrez:836848Gene3D:3.20.20.190GeneID:836848Genevisible:Q93XX5
GO:GO:0005886GO:GO:0006629GO:GO:0008081GO:GO:0046658Gramene:AT5G67130.1hmmpanther:PTHR13593hmmpanther:PTHR13593:SF31
HOGENOM:HOG000242533InParanoid:Q93XX5InterPro:IPR000909InterPro:IPR017946KEGG:ath:AT5G67130OMA:LMTHNAFPaxDb:Q93XX5
Pfam:Q93XX5Pfscan:PS50007PhylomeDB:Q93XX5PRIDE:Q93XX5PRO:PR:Q93XX5PROSITE:PS50007ProteinModelPortal:Q93XX5
Proteomes:UP000006548RefSeq:NP_569045.1STRING:3702.AT5G67130.1SUPFAM:SSF51695TAIR:AT5G67130TMHMM:TMhelixUniGene:At.21817
UniGene:At.69712UniProt:Q93XX5
Coordinates (TAIR10) chr5:+:26791599..26793649
Molecular Weight (calculated) 46609.70 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.05
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MSACINGLCR AVTVSLLLLL LSFSFSSACS NGNCQLLDSC SSATDCVSGL YCGDCPAVGR SKPVCTRGQA TSPTSIINGL PFNKYTWLMT HNAFSNANAP
101: LLPGVERITF YNQEDTITNQ LQNGVRGLML DMYDFNNDIW LCHSLRGQCF NFTAFQPAIN ILREVEAFLS QNPTEIVTII IEDYVHRPKG LSTLFANAGL
201: DKYWFPVSKM PRKGEDWPTV TDMVQENHRL LVFTSVAAKE DEEGVAYQWR YMVENESGDP GVKRGSCPNR KESQPLNSKS SSLFLMNYFP TYPVEKDACK
301: EHSAPLAEMV GTCLKSGGNR MPNFLAVNFY MRSDGGGVFE ILDRMNGPVL CGCETLSACQ PGAAYGSCKN VTVQTRTPSM DSTAGSNSGG SYSGSVQFSR
401: SLASVAQLNN IVVFCFSLLP LLIFLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)