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AT5G67070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 34
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 34 (RALFL34); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0KAeggNOG:ENOG410YQ19EMBL:AB020742EMBL:AF370212EMBL:AY088253EMBL:AY133871EMBL:CP002688
EnsemblPlants:AT5G67070EnsemblPlants:AT5G67070.1entrez:836842GeneID:836842Genevisible:Q9FHA6GO:GO:0004871GO:GO:0005179
GO:GO:0005622GO:GO:0007267GO:GO:0009506GO:GO:0019722GO:GO:0048046Gramene:AT5G67070.1hmmpanther:PTHR33136
hmmpanther:PTHR33136:SF7HOGENOM:HOG000237626InParanoid:Q9FHA6InterPro:IPR008801KEGG:ath:AT5G67070OMA:FDWPISHPaxDb:Q9FHA6
Pfam:PF05498Pfam:Q9FHA6PhylomeDB:Q9FHA6PRIDE:Q9FHA6PRO:PR:Q9FHA6Proteomes:UP000006548RefSeq:NP_201508.1
STRING:3702.AT5G67070.1TAIR:AT5G67070tair10-symbols:RALFL34UniGene:At.9600UniProt:Q9FHA6
Coordinates (TAIR10) chr5:+:26768120..26768509
Molecular Weight (calculated) 14730.20 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.47
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSLNLLL ILSLLTFISL QRSESLSDNP SLTLLPDGFD WPISHSDEFD IIDGEESFEV TEEDDGVTDR RSLYWRRTKY YISYGALSAN RVPCPPRSGR
101: SYYTHNCFRA RGPVHPYSRG CSSITRCRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)