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AT5G67060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HECATE 1 (HEC1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G50330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22083eggNOG:ENOG410IYF0eggNOG:ENOG410YJCHEMBL:AB020742
EMBL:AF488618EMBL:AK228927EMBL:CP002688EnsemblPlants:AT5G67060
EnsemblPlants:AT5G67060.1entrez:836841Gene3D:4.10.280.10GeneID:836841
Genevisible:Q9FHA7GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0010500GO:GO:0043565GO:GO:0045893
GO:GO:0048462Gramene:AT5G67060.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF74
HOGENOM:HOG000242863InParanoid:Q9FHA7IntAct:Q9FHA7InterPro:IPR011598
KEGG:ath:AT5G67060ncoils:CoilOMA:GVVMKGCPaxDb:Q9FHA7
Pfam:PF00010Pfam:Q9FHA7Pfscan:PS50888PhylomeDB:Q9FHA7
PRIDE:Q9FHA7PRO:PR:Q9FHA7PROSITE:PS50888ProteinModelPortal:Q9FHA7
Proteomes:UP000006548RefSeq:NP_201507.1SMART:SM00353SMR:Q9FHA7
STRING:3702.AT5G67060.1SUPFAM:SSF47459TAIR:AT5G67060tair10-symbols:HEC1
UniGene:At.28829UniProt:Q9FHA7
Coordinates (TAIR10) chr5:+:26766276..26767001
Molecular Weight (calculated) 26231.50 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.48
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)