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AT5G66940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF binding protein 1 (TAIR:AT3G50410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:836828eggNOG:ENOG410JGZGeggNOG:ENOG410ZMITEMBL:AB026640EMBL:BT029523EMBL:CP002688EnsemblPlants:AT5G66940
EnsemblPlants:AT5G66940.1entrez:836828ExpressionAtlas:Q9FGD6GeneID:836828Genevisible:Q9FGD6GO:GO:0000976GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT5G66940.1hmmpanther:PTHR31992hmmpanther:PTHR31992:SF12
HOGENOM:HOG000005865InParanoid:Q9FGD6InterPro:IPR003851KEGG:ath:AT5G66940OMA:SLINYNAPaxDb:Q9FGD6Pfam:PF02701
Pfam:Q9FGD6Pfscan:PS50884PhylomeDB:C0SVW4PhylomeDB:Q9FGD6PRIDE:Q9FGD6PRO:PR:Q9FGD6ProDom:PD007478
PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_201495.1scanprosite:PS01361STRING:3702.AT5G66940.1TAIR:AT5G66940
UniGene:At.66743UniProt:C0SVW4UniProt:Q9FGD6
Coordinates (TAIR10) chr5:-:26727989..26728666
Molecular Weight (calculated) 24118.80 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.50
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSEFSESRR VPKIPHGQGG SVAIPTDQQE QLSCPRCEST NTKFCYYNNY NFSQPRHFCK SCRRYWTHGG TLRDIPVGGV SRKSSKRSRT YSSAATTSVV
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)