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AT5G66930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 236 Blast hits to 236 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 70; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP6AeggNOG:KOG4493EMBL:AB010700EMBL:AY056211
EMBL:BT002759EMBL:BX833047EMBL:CP002688EnsemblPlants:AT5G66930
EnsemblPlants:AT5G66930.1EnsemblPlants:AT5G66930.2entrez:836827ExpressionAtlas:F4K265
GeneID:836827Genevisible:F4K265GO:GO:0005776GO:GO:0006914
GO:GO:0015031GO:GO:0031410hmmpanther:PTHR13292hmmpanther:PTHR13292:SF0
InterPro:IPR012445PANTHER:PTHR13292PaxDb:F4K265Pfam:PF07855
PRIDE:F4K265ProteinModelPortal:F4K265Proteomes:UP000006548RefSeq:NP_569042.2
RefSeq:NP_851284.1SMR:F4K265STRING:3702.AT5G66930.3TAIR:AT5G66930
UniGene:At.22831UniProt:Q84WU3
Coordinates (TAIR10) chr5:+:26725997..26727127
Molecular Weight (calculated) 18663.90 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.19
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCEVCQLKE LEVESFEIRE VLRCILHTIV FHRALGLIRP KDIDLELFEI TYVQCGEIEV EKKIDEKIEQ FINWIEKHPN KKSQICLSFY EVKSKQPSWF
101: TKIERLYWEQ WYINLNVLQP TKPPVGKSHH SKLVMDPGGS IDQFPVLISK NYIFLLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)