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AT5G66920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKU5 similar 17 (sks17); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 15 (TAIR:AT4G37160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66920-MONOMEReggNOG:COG2132eggNOG:KOG1263EMBL:AY094401EMBL:BT000862EMBL:CP002688EnsemblPlants:AT5G66920
EnsemblPlants:AT5G66920.1entrez:836826Gene3D:2.60.40.420GeneID:836826GO:GO:0005507GO:GO:0005618GO:GO:0009505
GO:GO:0009506GO:GO:0016722GO:GO:0080167Gramene:AT5G66920.1gramene_pathway:1.10.3.3gramene_pathway:PWY-2261hmmpanther:PTHR11709
hmmpanther:PTHR11709:SF26InterPro:IPR001117InterPro:IPR008972InterPro:IPR011706InterPro:IPR011707KEGG:ath:AT5G66920OMA:HYGTIPT
Pfam:PF00394Pfam:PF07731Pfam:PF07732PhylomeDB:Q8LPS9Proteomes:UP000006548RefSeq:NP_569041.1SMR:Q8LPS9
STRING:3702.AT5G66920.1SUPFAM:SSF49503TAIR:AT5G66920tair10-symbols:sks17TMHMM:TMhelixUniGene:At.6628UniProt:Q8LPS9
Coordinates (TAIR10) chr5:+:26722963..26725370
Molecular Weight (calculated) 60823.70 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.21
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)