AT5G66810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26672926..26676450 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83706.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 750 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRGIYYVDL DFLTCSPHET KFTHTRQSDR RSHPQSKIAG RFSSPTKEEP RKRKATMDST PVNWEALDAL IIDFVSSENL VEDAAAAVNS PPSPLSSPSS 101: SSSPSISSSS YHSRLIIRRI RSSIESGDIE TAIDILRSHA PFVLDDHRIL FRLQKQKFIE LLRKGTHEAA IDCLRTCVAP CALDAYPEAY EEFKHVLLAL 201: IYDKDDQTSP VANEWAEKRR YEMAGLMSSV LRASLQAYDP VFSMTLRYLI SIHKGFCFHQ GISSAVSDLT HRLLLEERDA PATPIESMYE VPPFDEVDIQ 301: ALAHAVELTR QGAVDSMKFA KGDLFQAFQN ELCRMRLDVS VLDELVKEYC IYRGIVDSEM QMITIPAKRN QSEVGRSLSR DCSSEIDLNT SQHSDIENYS 401: NKSMLDGSLT YDTEMSCEEG GDVGTRYGSE PTSVCEDCST SWSNQCENTR ALLRIRSHMN SEGNKRKRWC GRTAEMDCLP RISFANSESG TNPIEDKYEI 501: ALALKELVSR GMAAEAFSEI STMDPDFFTQ NPGLLFHLKQ VEFLKLVSAG DHNGALKVAC FHLGPLAAND QSLLKTLKET LLVLLQPDGT APGKDLPLND 601: LANTLQVSVG NRLGIEEPKL MKIIKATLHT HTEWFKLQMC KDRFNNLLKI DSLKEVNTDL IGAIKSKSKK DSNTNLSSQV TTTSSSTMTS EDGGSSSLMM 701: MTQTLPREAL WEESAILKVM EFLAMPRSDA IQLLSQYNGD AEAVIQQLFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)