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AT5G66810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.858
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRG3eggNOG:KOG2659EMBL:CP002688EnsemblPlants:AT5G66810EnsemblPlants:AT5G66810.1entrez:836814GeneID:836814
Gramene:AT5G66810.1hmmpanther:PTHR12864hmmpanther:PTHR12864:SF13InParanoid:F4K250InterPro:IPR006595InterPro:IPR024964KEGG:ath:AT5G66810
OMA:THSEWFKPaxDb:F4K250Pfam:PF10607Pfscan:PS50897PRIDE:F4K250PROSITE:PS50897Proteomes:UP000006548
RefSeq:NP_201482.2SMART:SM00668STRING:3702.AT5G66810.1TAIR:AT5G66810UniGene:At.28848UniProt:F4K250
Coordinates (TAIR10) chr5:+:26672926..26676450
Molecular Weight (calculated) 83706.40 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.34
Length 750 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRGIYYVDL DFLTCSPHET KFTHTRQSDR RSHPQSKIAG RFSSPTKEEP RKRKATMDST PVNWEALDAL IIDFVSSENL VEDAAAAVNS PPSPLSSPSS
101: SSSPSISSSS YHSRLIIRRI RSSIESGDIE TAIDILRSHA PFVLDDHRIL FRLQKQKFIE LLRKGTHEAA IDCLRTCVAP CALDAYPEAY EEFKHVLLAL
201: IYDKDDQTSP VANEWAEKRR YEMAGLMSSV LRASLQAYDP VFSMTLRYLI SIHKGFCFHQ GISSAVSDLT HRLLLEERDA PATPIESMYE VPPFDEVDIQ
301: ALAHAVELTR QGAVDSMKFA KGDLFQAFQN ELCRMRLDVS VLDELVKEYC IYRGIVDSEM QMITIPAKRN QSEVGRSLSR DCSSEIDLNT SQHSDIENYS
401: NKSMLDGSLT YDTEMSCEEG GDVGTRYGSE PTSVCEDCST SWSNQCENTR ALLRIRSHMN SEGNKRKRWC GRTAEMDCLP RISFANSESG TNPIEDKYEI
501: ALALKELVSR GMAAEAFSEI STMDPDFFTQ NPGLLFHLKQ VEFLKLVSAG DHNGALKVAC FHLGPLAAND QSLLKTLKET LLVLLQPDGT APGKDLPLND
601: LANTLQVSVG NRLGIEEPKL MKIIKATLHT HTEWFKLQMC KDRFNNLLKI DSLKEVNTDL IGAIKSKSKK DSNTNLSSQV TTTSSSTMTS EDGGSSSLMM
701: MTQTLPREAL WEESAILKVM EFLAMPRSDA IQLLSQYNGD AEAVIQQLFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)