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AT5G66770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G50650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22052eggNOG:ENOG410IJHSeggNOG:ENOG410YBEMEMBL:AB010700EMBL:AY062538EMBL:BT002580EMBL:CP002688
EnsemblPlants:AT5G66770EnsemblPlants:AT5G66770.1entrez:836810GeneID:836810Genevisible:Q9FL03GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT5G66770.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF65HOGENOM:HOG000240374InParanoid:Q9FL03
IntAct:Q9FL03InterPro:IPR005202KEGG:ath:AT5G66770OMA:YGGAAWPPaxDb:Q9FL03Pfam:PF03514Pfam:Q9FL03
Pfscan:PS50985PhylomeDB:Q9FL03PRIDE:Q9FL03PRO:PR:Q9FL03PROSITE:PS50985ProteinModelPortal:Q9FL03Proteomes:UP000006548
RefSeq:NP_201478.1STRING:3702.AT5G66770.1TAIR:AT5G66770UniGene:At.27307UniProt:Q9FL03
Coordinates (TAIR10) chr5:+:26660723..26662477
Molecular Weight (calculated) 64590.50 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.41
Length 584 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)