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AT5G66760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24727099 (2014): mitochondrion
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:19688752 (2009): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17137349 (2006): mitochondrion
  • PMID:15604729 (2004): mitochondrion
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : succinate dehydrogenase 1-1
Curator
Summary (TAIR10)
One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.
Computational
Description (TAIR10)
succinate dehydrogenase 1-1 (SDH1-1); FUNCTIONS IN: cobalt ion binding, succinate dehydrogenase activity, ATP binding; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-2 (TAIR:AT2G18450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66760-MONOMERBioCyc:MetaCyc:AT5G66760-MONOMERBioGrid:22051EC:1.3.5.1eggNOG:COG1053eggNOG:KOG2403EMBL:AB018119
EMBL:AF367341EMBL:AF436833EMBL:AJ001809EMBL:AY045674EMBL:AY124812EMBL:CP002688EnsemblPlants:AT5G66760
EnsemblPlants:AT5G66760.1entrez:836809Gene3D:1.20.58.100Gene3D:3.50.50.60Gene3D:3.90.700.10GeneID:836809Genevisible:O82663
GO:GO:0000104GO:GO:0005524GO:GO:0005618GO:GO:0005739GO:GO:0005749GO:GO:0006099GO:GO:0006121
GO:GO:0008177GO:GO:0045273GO:GO:0050660GO:GO:0050897Gramene:AT5G66760.1HOGENOM:HOG000160475InParanoid:O82663
IntAct:O82663InterPro:IPR003952InterPro:IPR003953InterPro:IPR011281InterPro:IPR014006InterPro:IPR015939InterPro:IPR023753
InterPro:IPR027477InterPro:IPR030664KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1KEGG:ath:AT5G66760
KO:K00234MINT:MINT-8063231OMA:GKNHNSVPaxDb:O82663Pfam:O82663Pfam:PF00890Pfam:PF02910
PhylomeDB:O82663PIR:T51815PIRSF:PIRSF000171PRIDE:O82663PRO:PR:O82663PROSITE:PS00504ProteinModelPortal:O82663
Proteomes:UP000006548RefSeq:NP_201477.1scanprosite:PS00504SMR:O82663STRING:3702.AT5G66760.1SUPFAM:SSF46977SUPFAM:SSF51905
SUPFAM:SSF56425SwissPalm:O82663TAIR:AT5G66760tair10-symbols:SDH1-1TIGRfam:TIGR01812TIGRfam:TIGR01816TIGRFAMs:TIGR01812
TIGRFAMs:TIGR01816UniGene:At.22655UniGene:At.67108UniPathway:UPA00223UniProt:O82663
Coordinates (TAIR10) chr5:+:26653776..26657224
Molecular Weight (calculated) 69660.30 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.35
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)