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AT5G66590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AB013389EMBL:AF386987
EMBL:AY093248EMBL:CP002688EnsemblPlants:AT5G66590EnsemblPlants:AT5G66590.1
entrez:836791Gene3D:3.40.33.10GeneID:836791Gramene:AT5G66590.1
hmmpanther:PTHR10334hmmpanther:PTHR10334:SF207InterPro:IPR001283InterPro:IPR014044
KEGG:ath:AT5G66590OMA:VRYQRDKPANTHER:PTHR10334Pfam:PF00188
PRINTS:PR00837Proteomes:UP000006548RefSeq:NP_201460.1SMART:SM00198
SMR:Q9FJY1STRING:3702.AT5G66590.1SUPFAM:SSF55797TAIR:AT5G66590
UniGene:At.19935UniProt:Q9FJY1
Coordinates (TAIR10) chr5:+:26574255..26574812
Molecular Weight (calculated) 20100.40 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.09
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTHHIIFV ALLVISVKAI SPAAKLKPKQ IVSTSPPPPP TISAAAKAFT DAHNKARAMV GVPPLVWSQT LEAAASRLAR YQRNQKKCEF ASLNPGKYGA
101: NQLWAKGLVA VTPSLAVETW VKEKPFYNYK SDTCAANHTC GVYKQVVWRN SKELGCAQAT CTKESTVLTI CFYNPPGNVI GQKPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)