suba logo
AT5G66570.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20049866 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16923014 (2006): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PS II oxygen-evolving complex 1
Curator
Summary (TAIR10)
Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO1 is the major isoform in the wild-type.
Computational
Description (TAIR10)
PS II oxygen-evolving complex 1 (PSBO1); FUNCTIONS IN: oxygen evolving activity, poly(U) RNA binding; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: photosystem II subunit O-2 (TAIR:AT3G50820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G66570-MONOMERBioGrid:22031DNASU:836789eggNOG:ENOG410IGC8eggNOG:ENOG410XP4GEMBL:AB013389EMBL:AF372898
EMBL:AF424626EMBL:AY052299EMBL:AY054583EMBL:AY056401EMBL:AY061924EMBL:AY087630EMBL:AY136291
EMBL:BT000407EMBL:CP002688EMBL:X52428EMBL:Y15433EMBL:Z18374EnsemblPlants:AT5G66570EnsemblPlants:AT5G66570.1
entrez:836789GeneID:836789Genevisible:P23321GO:GO:0005509GO:GO:0008266GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009543GO:GO:0009570GO:GO:0009579GO:GO:0009654GO:GO:0010205GO:GO:0010207
GO:GO:0010242GO:GO:0010287GO:GO:0016021GO:GO:0019684GO:GO:0019898GO:GO:0031977GO:GO:0035304
GO:GO:0042549GO:GO:0042742GO:GO:0048046GO:GO:0055035GO:GO:0055114Gramene:AT5G66570.1hmmpanther:PTHR34058
hmmpanther:PTHR34058:SF1InParanoid:P23321IntAct:P23321InterPro:IPR002628InterPro:IPR011250iPTMnet:P23321KEGG:ath:AT5G66570
KO:K02716MINT:MINT-2583944OMA:FQPITVLPaxDb:P23321Pfam:P23321Pfam:PF01716PhylomeDB:P23321
PIR:S11852PRIDE:P23321PRO:PR:P23321ProteinModelPortal:P23321Proteomes:UP000006548RefSeq:NP_201458.1SMR:P23321
STRING:3702.AT5G66570.1SUPFAM:SSF56925SWISS-2DPAGE:P23321TAIR:AT5G66570tair10-symbols:MSP-1tair10-symbols:OE33tair10-symbols:OEE1
tair10-symbols:OEE33tair10-symbols:PSBO-1tair10-symbols:PSBO1UniGene:At.25361UniGene:At.48629UniGene:At.72732UniProt:P23321
Coordinates (TAIR10) chr5:+:26568744..26570124
Molecular Weight (calculated) 35144.20 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.33
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASLQSTAT FLQSAKIATA PSRGSSHLRS TQAVGKSFGL ETSSARLTCS FQSDFKDFTG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKADSV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV ASDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDSFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL VKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)