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AT5G66420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5441eggNOG:COG5564eggNOG:ENOG410IEMAeggNOG:ENOG410IQEWEMBL:AF378889EMBL:BT001069EMBL:CP002688
EnsemblPlants:AT5G66420EnsemblPlants:AT5G66420.1entrez:836774ExpressionAtlas:Q94JM0Gene3D:3.20.20.70GeneID:836774GO:GO:0003824
Gramene:AT5G66420.1hmmpanther:PTHR31862HOGENOM:HOG000241845InterPro:IPR008322InterPro:IPR009215InterPro:IPR013785InterPro:IPR015813
Pfam:PF06792Pfam:PF09370Proteomes:UP000006548RefSeq:NP_569034.1SMR:Q94JM0STRING:3702.AT5G66420.2SUPFAM:SSF51621
SUPFAM:SSF53697TAIR:AT5G66420UniGene:At.28868UniGene:At.8554UniProt:Q94JM0
Coordinates (TAIR10) chr5:-:26521893..26524537
Molecular Weight (calculated) 70037.30 Da
IEP (calculated) 5.95
GRAVY (calculated) 0.01
Length 655 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKCLENFLR QAFEDNSLAG AIGLGGSGGT SLISSAFRSL PIGIPKVIVS TVASGQTEPY VGTSDLVLIP SLVDVCGINS VSRVVFSNAG ASFAGMVVGR
101: LELFRSSPSD NGKCTVGITM FGVTTPCVNA VQEILTREGY ETLVFHATGV GGRAMESLVK EGFIQGVMDI TTTEVADHLV GGVMACDSSR FDITIEKGIP
201: LVLSVGALDM VNFGGKDTIP SHFQTRKIHV HNEQVSLIRT TAEENKKFAR FIADKLNKST SKVRVCIPEK GLSALDAPGK PFCDPEATGA LINELQGLIQ
301: TNDDRQVNIY SHHINDPEFA EALVASFLEI CPKTYAQIKP SETTSTKPST GEHDDGHVRS RLERIPYSPK EFPNAKPETL ERTQAILGRL RDQIEKGIPI
401: IGGGAGTGIS AKFEEAGGID LIVIYNSGRF RMAGRGSLAG LLPFADANAV VLEMANEVLP VVKAVPVLAG VCATDPFRRM DYFLKQLESI GFVGVQNFPT
501: VGLFDGNFRQ NLEETGMGYG LEVKMISEAH KMGLLTTPYA FNPKEGEEMA KAGADIIVAH MGLTTSGNIG AKTAVSVEES VVRVQAIADA ARRFNPDIIV
601: LCHGGPISGP EEAEFVLKRT QGCVHGFYGA SSMERLPVEQ AITNTVQKYK SISIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)