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AT5G66390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:1.11.1.7eggNOG:ENOG410IIQMeggNOG:ENOG410YA1BEMBL:AK227717EnsemblPlants:AT5G66390EnsemblPlants:AT5G66390.1entrez:836771
ExpressionAtlas:Q0WT45GeneID:836771GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT5G66390.1hmmpanther:PTHR31388hmmpanther:PTHR31388:SF3InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255
InterPro:IPR019793KEGG:00940+1.11.1.7KEGG:ath:AT5G66390KO:K00430OMA:FATPFKFPaxDb:Q0WT45Pfam:PF00141
Pfam:Q9FJZ9Pfscan:PS50873PhylomeDB:Q0WT45PRIDE:Q0WT45PRINTS:PR00458PRINTS:PR00461PROSITE:PS00435
PROSITE:PS50873ProteinModelPortal:Q0WT45RefSeq:NP_201440.1scanprosite:PS00435SMR:Q0WT45STRING:3702.AT5G66390.1SUPFAM:SSF48113
TAIR:AT5G66390TMHMM:TMhelixUniGene:At.25460UniProt:Q0WT45UniProt:Q9FJZ9
Coordinates (TAIR10) chr5:-:26516063..26517329
Molecular Weight (calculated) 37428.80 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.26
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSLNILIA ALSLIAFSPF CLCSKAYGSG GYLFPQFYDQ SCPKAQEIVQ SIVAKAFEHD PRMPASLLRL HFHDCFVKGC DASILLDSSG TIISEKRSNP
101: NRNSARGFEL IEEIKHALEQ ECPETVSCAD ILALAARDST VITGGPSWEV PLGRRDARGA SLSGSNNDIP APNNTFQTIL TKFKRQGLDL VDLVSLSGSH
201: TIGNSRCTSF RQRLYNQSGN GKPDMTLSQY YATLLRQRCP RSGGDQTLFF LDFATPFKFD NHYFKNLIMY KGLLSSDEIL FTKNKQSKEL VELYAENQEA
301: FFEQFAKSMV KMGNISPLTG AKGEIRRICR RVNHAY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)