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AT5G66360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA adenine dimethylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity; INVOLVED IN: rRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 10133 Blast hits to 10130 proteins in 3048 species: Archae - 291; Bacteria - 6778; Metazoa - 278; Fungi - 201; Plants - 119; Viruses - 0; Other Eukaryotes - 2466 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66360-MONOMEREC:2.1.1.-eggNOG:COG0030eggNOG:KOG0820EMBL:AB013389EMBL:AB022211EMBL:AY120713
EMBL:BT008836EMBL:CP002688EnsemblPlants:AT5G66360EnsemblPlants:AT5G66360.1EnsemblPlants:AT5G66360.2entrez:836768ExpressionAtlas:Q9FK02
Gene3D:3.40.50.150GeneID:836768Genevisible:Q9FK02GO:GO:0000179GO:GO:0003723GO:GO:0005739GO:GO:0046085
hmmpanther:PTHR11727hmmpanther:PTHR11727:SF12HOGENOM:HOG000227963InParanoid:Q9FK02InterPro:IPR001737InterPro:IPR011530InterPro:IPR020596
InterPro:IPR020598InterPro:IPR029063KEGG:ath:AT5G66360KO:K14191OMA:EIDKRMVPANTHER:PTHR11727PaxDb:Q9FK02
Pfam:PF00398Pfscan:PS51689PhylomeDB:Q9FK02PRIDE:Q9FK02PRO:PR:Q9FK02PROSITE:PS01131PROSITE:PS51689
ProteinModelPortal:Q9FK02Proteomes:UP000006548RefSeq:NP_201437.2RefSeq:NP_975003.1scanprosite:PS01131SMART:SM00650SMR:Q9FK02
STRING:3702.AT5G66360.2SUPFAM:SSF53335TAIR:AT5G66360TIGRFAMs:TIGR00755UniGene:At.28871UniProt:Q8L867
Coordinates (TAIR10) chr5:+:26510329..26511711
Molecular Weight (calculated) 40176.40 Da
IEP (calculated) 9.55
GRAVY (calculated) -0.45
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MILRLKDQTL IKINSTRSYL SSLVFRRDSH SQARTKPDHD RRRRGYERDV RIEEKKEHDG LFLCKSKGQH LLTNTRILDS IVRSSDIRPT DTVLEIGPGT
101: GNLTMKLLEA AQNVVAVELD KRMVEILRKR VSDHGFADKL TIIQKDVLKT DFPHFDLVVA NIPYNISSPL VAKLVYGSNT FRSATLLLQK EFSRRLLANP
201: GDSDFNRLAV NVKITPKEII PDVNVQEWLA FTRTCFGKKN KTLGSMFRQK KKVMELQSLS AGRHGSNVEV MNQTGGDSDS DVEEDGKDDL LCLDTDASMF
301: KERVIEILRT NGFEEKRPSK LSHRELLHLL SLFNQAGIFF HDITSLQMDL HE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)