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AT5G66350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lateral root primordium (LRP) protein-related
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational
Description (TAIR10)
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVTFeggNOG:ENOG410YDRXEMBL:AB022211EMBL:AB493816
EMBL:AF152555EMBL:CP002688EnsemblPlants:AT5G66350EnsemblPlants:AT5G66350.1
entrez:836767GeneID:836767Genevisible:Q9XGX0GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007275
GO:GO:0009734GO:GO:0009739GO:GO:0009740GO:GO:0009851
GO:GO:0009938GO:GO:0046872GO:GO:0046982Gramene:AT5G66350.1
hmmpanther:PTHR31604hmmpanther:PTHR31604:SF3HOGENOM:HOG000242956InParanoid:Q9XGX0
InterPro:IPR006510InterPro:IPR006511InterPro:IPR007818KEGG:ath:AT5G66350
OMA:EEEYAYKPaxDb:Q9XGX0Pfam:PF05142Pfam:Q9XGX0
PhylomeDB:Q9XGX0PRO:PR:Q9XGX0ProteinModelPortal:Q9XGX0Proteomes:UP000006548
RefSeq:NP_201436.1STRING:3702.AT5G66350.1TAIR:AT5G66350tair10-symbols:SHI
TIGRfam:TIGR01623TIGRfam:TIGR01624TIGRFAMs:TIGR01623TIGRFAMs:TIGR01624
UniGene:At.9638UniProt:Q9XGX0
Coordinates (TAIR10) chr5:-:26504714..26506143
Molecular Weight (calculated) 35378.80 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.73
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFFSLGHG GGGNTPDNHR TNTNNPSSSG TESWLWCRNP NSNADGGEAG PSYKGTLELW QHPNNQEIIF QQQQQQQQRL DLYTSAAGLG VGPSNRSLIE
101: TSGGALMMMR SGSGSGGPSC QDCGNQSKKD CSHMRCRTCC KSRGLDCPTH VKSTWVPAAK RRERQQQLST GQQPQQLGGS VPKRQRERIP ARSTSMAYTR
201: IPSNNTSGLE VGNFPPEVSS SAVFRCVRVS SVDDEEEEYA YKTAVSIGGH VFKGVLYDQG PAERSSSGGG SQPLNLITAG PSASSSSPNV SCNNGVVGST
301: SDHYIDPASL NYPTPINTFM TGTHFFSNSR S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)