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AT5G66330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66330-MONOMEReggNOG:COG4886eggNOG:KOG0619EMBL:AB022211EMBL:AY065384EMBL:AY117205EMBL:CP002688
EnsemblPlants:AT5G66330EnsemblPlants:AT5G66330.1entrez:836765Gene3D:3.80.10.10GeneID:836765Gramene:AT5G66330.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF169HOGENOM:HOG000116557IntAct:Q9FH56InterPro:IPR001611InterPro:IPR032675KEGG:ath:AT5G66330OMA:GFRCDTI
Pfam:PF13855Pfscan:PS51450PhylomeDB:Q9FH56PROSITE:PS51450Proteomes:UP000006548RefSeq:NP_201434.1SMR:Q9FH56
STRING:3702.AT5G66330.1SUPFAM:SSF52058TAIR:AT5G66330UniGene:At.28506UniProt:Q9FH56
Coordinates (TAIR10) chr5:-:26500531..26501787
Molecular Weight (calculated) 45334.20 Da
IEP (calculated) 4.86
GRAVY (calculated) 0.11
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLISLVLL LLLTLSSAES KTFWGDVAAL KDFKNSVDAK SMSPGSCLSS WDFSVDPCDN IFSDTFTCGF RCDSVVTGSG RVTELSLDQA GYSGSLSSVS
101: FNLPYLQTLD LSGNYFSGPL PDSLSNLTRL TRLTVSGNSF SGSIPDSVGS MTVLEELVLD SNRLYGSIPA SFNGLSSLKR LEIQLNNISG EFPDLSSLKN
201: LYYLDASDNR ISGRIPSFLP ESIVQISMRN NLFQGTIPES FKLLNSLEVI DLSHNKLSGS IPSFIFTHQS LQQLTLSFNG FTSLESPYYS PLGLPSELIS
301: VDLSNNQILG ALPLFMGLSP KLSALSLENN KFFGMIPTQY VWKTVSPGSE FAGFQRLLLG GNFLFGVVPG PLMALKPGSA NVQLAGNCFS WCPATLFFCQ
401: GQEQRSPKEC RKFSRVVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)