suba logo
AT5G66180.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.871
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8827 Blast hits to 7075 proteins in 2181 species: Archae - 455; Bacteria - 6424; Metazoa - 542; Fungi - 251; Plants - 202; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0144eggNOG:KOG2198EMBL:CP002688EnsemblPlants:AT5G66180EnsemblPlants:AT5G66180.1entrez:836750ExpressionAtlas:F4JZ42
Gene3D:3.40.50.150GeneID:836750GO:GO:0008168Gramene:AT5G66180.1hmmpanther:PTHR22807hmmpanther:PTHR22807:SF16InParanoid:F4JZ42
InterPro:IPR001678InterPro:IPR023267InterPro:IPR023269InterPro:IPR029063OMA:QKFEQWGPaxDb:F4JZ42Pfam:PF01189
Pfscan:PS51686PRIDE:F4JZ42PRINTS:PR02008PRINTS:PR02010PROSITE:PS51686ProteinModelPortal:F4JZ42Proteomes:UP000006548
RefSeq:NP_201419.2SMR:F4JZ42STRING:3702.AT5G66180.1SUPFAM:SSF53335TAIR:AT5G66180UniGene:At.47570UniGene:At.49233
UniProt:F4JZ42
Coordinates (TAIR10) chr5:+:26448952..26450919
Molecular Weight (calculated) 44211.60 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.44
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETSKLQLP ESFLSFLEAN GLDPSIYTHG DSIPRYVRLK PGFEDAFEEI ESEINCKLEK VNWLPGFYSI PPDVHIARTK AYQQGMMYGI DAASGAAVSA
101: LGISPGDHVL DLCAAPGAKL CMMLDLLGQK GTATGVDVAR HRLAACRTML LKYGLAERSR LFLADGTTFS VPPTRNLPCE SCVDDHEDTF KQWTSRRPYK
201: ERKQEAKARK NSVLPQNGQA EIIFYGQGSG VIGLKKNELY RSLDQNDYAS YGYDKVLVDA ECTHDGSIKH IQKFEQWGWK TLERRVLDAE RTDTNLKALQ
301: LNLLRNGFRL LKEAGTLVYS TCSLTHAQNE DVVDQFLSEN FSAELQEIEM AKDWPCRSGR TPKTLRFDPS TSATSGLFVA KIRKLPPNEA KKNVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)