AT5G66130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RADIATION SENSITIVE 17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26434236..26437091 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66822.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKKKLSLED EDDDRSYNLR SSRSNAKSKP RSSAGTATNP RASKRARLSG ASATQEDSSL VDKIRLSFED FDEALSGFKV SSGYERSKNT DLWVDKYRPR 101: TLEELSVHKK KVDEVKLWFQ ESLDFLKNGL RNNVLLVTGQ AGVGKSATIH LITSILGVTV HEWNAPIPTI WQEHVHNTSS GLKYTSKLDE FENFVESTRK 201: YGVMASSSTD GIKAPVVLLI DDLPLANGRH AFERLQNCLL LLVKSTQIPT VILITDHNNA DSSDQTARRM EDTQSSLERA GALKVAFNPI TKNSIKKVLQ 301: RICREEHCKV TTMEIDQMAT ASGGDIRHAI TSLQLFSVKP ELNHTKIKSP RPGMEDNYHG NEQTMYSGLD SGISSCFGRD ETLSLFHALG KFLHNKRETD 401: NVIISECSSS LVHDEFARLP LKMDAPEKVL SQAHGQAGRV VDFLHENVLD FVSDGAIEDA WCVSSYLADA DLLLADIRGK MSGHNNTEDV PQSAGASVAV 501: RGVLYGNKQP CSSRWHVIRK PKLWQVEQSS IQTKKNLREQ RNISYEGSRV ADISVMATEY SPVLKWLSYR ASPDAFPGMG EETDEEDSDI SEDDEIQDW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)