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AT5G66070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB011474EMBL:BT012531EMBL:BT014957EMBL:CP002688EnsemblPlants:AT5G66070EnsemblPlants:AT5G66070.1entrez:836739
ExpressionAtlas:Q9FKX5Gene3D:3.30.40.10GeneID:836739Genevisible:Q9FKX5GO:GO:0006952GO:GO:0008270GO:GO:0016021
hmmpanther:PTHR14155HOGENOM:HOG000242081InParanoid:Q9FKX5InterPro:IPR001841InterPro:IPR013083InterPro:IPR027367Pfam:PF13441
Pfam:PF13639Pfam:Q9FKX5Pfscan:PS50089PhylomeDB:Q9FKX5PRO:PR:Q9FKX5PROSITE:PS50089ProteinModelPortal:Q9FKX5
Proteomes:UP000006548RefSeq:NP_201408.1SMART:SM00184SMR:Q9FKX5SUPFAM:SSF57850TAIR:AT5G66070TMHMM:TMhelix
UniGene:At.28882UniProt:Q9FKX5
Coordinates (TAIR10) chr5:+:26421923..26423033
Molecular Weight (calculated) 24116.30 Da
IEP (calculated) 6.59
GRAVY (calculated) 0.39
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGYYSLSPI SVLHRIKDSF HFAVSALLAN LFSALFTFFF ALVGTLLGAL TGALIGQETE SGFIRGAAVG AISGAVFSIE VFESSLLLWQ SDESGIGCLL
101: YLIDVIASLL SGRLVRERIG PAMLSAVQSQ MGAVESQFQD HTDIFDTAIS KGLTGDSLNR IPKVRITDTS PEIVSCSVCL QDFQVGETVR SLPHCHHMFH
201: LPCIDKWLRR HASCPLCRRH L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)