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AT5G66000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.935
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AB011474EMBL:AY045867EMBL:AY096755EMBL:CP002688EnsemblPlants:AT5G66000EnsemblPlants:AT5G66000.1entrez:836730
GeneID:836730Gramene:AT5G66000.1hmmpanther:PTHR35477hmmpanther:PTHR35477:SF1HOGENOM:HOG000152532IntAct:Q9FKY2KEGG:ath:AT5G66000
OMA:IASFPPNProteomes:UP000006548RefSeq:NP_569024.1STRING:3702.AT5G66000.1TAIR:AT5G66000UniGene:At.49231UniGene:At.70255
UniProt:Q9FKY2
Coordinates (TAIR10) chr5:-:26396565..26397212
Molecular Weight (calculated) 22731.80 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.41
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGVNVLTKE VDANGVPHPS TNVDYHLSIL LASHLSNPDL TPQEIADASR CTAAAAAIAA KAARATADEK AAAAAKAVAA AKTALDLIAS FPPNQGLVQD
101: ACLHKDKKMK KKHVAADLLF SKDDALPSKL QLGGVVSQGI VSNSSSSCQH KNDDQCAVPT CSRERLNTEH AVSKRVEFDG LGMELDTDRL NESVNGEGAK
201: EEIQVTRKRG RPKSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)