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AT5G65950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSTEeggNOG:KOG4386EMBL:CP002688EnsemblPlants:AT5G65950
EnsemblPlants:AT5G65950.1entrez:836725GeneID:836725Gramene:AT5G65950.1
hmmpanther:PTHR14374InParanoid:F4JXM9InterPro:IPR021773iPTMnet:F4JXM9
KEGG:ath:AT5G65950OMA:VTYPNPDPaxDb:F4JXM9Pfam:PF11817
PRIDE:F4JXM9ProteinModelPortal:F4JXM9Proteomes:UP000006548RefSeq:NP_201396.4
STRING:3702.AT5G65950.1TAIR:AT5G65950UniGene:At.21706UniProt:F4JXM9
Coordinates (TAIR10) chr5:+:26380290..26384960
Molecular Weight (calculated) 132235.00 Da
IEP (calculated) 6.21
GRAVY (calculated) -0.12
Length 1190 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEYPEELRT PPVSLVALFG YAELHASITK YLHSQQPPIN ALAFPDFSQI SLLLAHDDQI SRTSSFRDPL SVSDSASPIP SRCGGILKRD WLLKHRTKVP
0101: ALVAAFFPSH HIFGDPTQWL QVCSDLDSLK SVIRPKNIKL VVVVVQSSPH EDISDDRLVA LRKRAELDSK YVLFFNSSIV SELTLSLSRL ASAFAELALS
0201: YYREEGRRIK SRIEKRSSNS LDLNVRYCFK VAVYAEFRRD WGEALKFYED AYHSLHEMIG TSTRLPAIQR LVEIKIIAEQ LHFKISTLLL HGGKLIEAVT
0301: WFHQHKTSYE KVVGSTEFIF LHWDWMSRQF LVFAELLETS SATGQSLTSS NQGTAEISLT EFEFYPAYYY QLAAHYLKDK KSALELLLSM SEIAQEIDSS
0401: SASITPSVYV GQFAQLLEKG EAITLHSITD EEYTRYTISE AKRVQDSLQI IAWLKRSYES FTNLKAQRMA ALCAFEVARE YFDLADPNNA KFFFDIAANL
0501: YRQEGWVTLL WEVLGYLREC SRNLDALKDF VEFSLEMVAL PVTSYENSGN LRNKNYGPGG PATISGRESI HQEVFTLVCR EAELLSSTEG SGFKLATDSP
0601: LHLEIDLVSP LRPVLLASVA FHDQMIKPHA LCSFTLSLLS HLPLPVEIDH LEVQFNQSTC NFVIRNSQRP LWASASNTVK SGSQVENAPL LVLVPNNWLR
0701: LTYAIKSEQS GKLECLSVLA KLGPLFTICS RAESPAAMED LPVWKHENRV ESLPTKDPVL AVFGQKATQV DEPEPQVDVS LGASGPALVG EDFAMPIVVT
0801: SKGHAVYSGE LKINLVDVGG GGLFSPREAE PFSLESHHVE ICGIDGAEGN NESESETGSI KKIQQSFGLV SVPYLKEGES WSCKLEIKWH RPKPVMLFVS
0901: LGYLPHGSEA NTQKVHIHKS LQIEGKMPLL ISNRFMLPYR RDHLLLNRIK PAPDSEDVSS LPLNEKSVLV VSAKNCSEIA LKLVSMSIEF DDEQGETSCL
1001: IQQGGGCGDS PSSANLAPGE EFKKVFTVIP TTRTPKLGLG SIHLKWRREG GNITEAYVST KHKLPEVNVE ASPLVMSLDS PPYAILGEPF TYAVRICNQT
1101: QLLQEAKFGL ADAQSFVLSG SHSNTVSVLP KSEHVLSYKL VPLTCGEQQL PKITLTSARY AAEFQPSAVA SSVFVFPSAP QAEKAISTSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)