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AT5G65910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BSD domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIVQeggNOG:ENOG410XZJ1EMBL:AB018108EMBL:AY034931
EMBL:AY113924EMBL:CP002688EnsemblPlants:AT5G65910EnsemblPlants:AT5G65910.1
entrez:836720GeneID:836720Gramene:AT5G65910.1hmmpanther:PTHR31923
hmmpanther:PTHR31923:SF4HOGENOM:HOG000241534InterPro:IPR005607KEGG:ath:AT5G65910
OMA:VIEERSTPfam:PF03909Pfscan:PS50858PhylomeDB:Q9FHP0
PROSITE:PS50858Proteomes:UP000006548RefSeq:NP_569021.1SMART:SM00751
SMR:Q9FHP0SUPFAM:SSF140383TAIR:AT5G65910UniGene:At.19658
UniGene:At.66704UniProt:Q9FHP0
Coordinates (TAIR10) chr5:-:26361592..26363341
Molecular Weight (calculated) 48201.00 Da
IEP (calculated) 4.00
GRAVY (calculated) -0.66
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MAWLARSIAN SLKLDEEDED DDKHLNQQPS ESVSDSQSPR GVKEDISELT KTLRTQFWGV ASFLSQPSSS PDLQERNQTP DHPEEDEDLI AGIKNDFAEI
101: GGRFRTGISK LSGNLPVSEF TKIASNFLQL SSEDVDPKDY DVIGVTEELV AFVKDLAMHP ETWLDFPLPD DDDSFDDFEL ADAQYEHALA VERLAPSLAS
201: LRIELCPEYM TENCFWRIYF VLVHPKLSKD HALLLSTPQV LEARSMLSQE LQKRSKLPVE AGSSEANTVI VEPLTVPPSP ETAAVKIVNP VESSDVETDK
301: HPIESKEIQI VDKSVIEERS TSTASSSRFI NVQVDDEDDD DADDWLNDEE TSSVSAIGGR STTNHPFGED EEDVSFSDLE EEDDNEGDVK VSYKNLTNSG
401: SDSSDKKSPD WVQLKEVKEK KKSNDWLDVD AV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)