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AT5G65890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ACT domain repeat 1
Curator
Summary (TAIR10)
Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.
Computational
Description (TAIR10)
ACT domain repeat 1 (ACR1); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 3 (TAIR:AT1G76990.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFEFeggNOG:ENOG410Y9V6EMBL:AB018108EMBL:AF360256EMBL:AF528058EMBL:AL021684EMBL:AY040070
EMBL:CP002688EnsemblPlants:AT5G65890EnsemblPlants:AT5G65890.1entrez:836718ExpressionAtlas:Q9FHP1GeneID:836718Genevisible:Q9FHP1
GO:GO:0005634GO:GO:0008152GO:GO:0016597hmmpanther:PTHR31096hmmpanther:PTHR31096:SF7HOGENOM:HOG000239159InParanoid:Q9FHP1
InterPro:IPR002912OMA:TEHTAFEPaxDb:Q9FHP1Pfam:PF01842Pfam:Q9FHP1Pfscan:PS51671PhylomeDB:Q9FHP1
PIR:T05884PRIDE:Q9FHP1PRO:PR:Q9FHP1PROSITE:PS51671ProteinModelPortal:Q9FHP1Proteomes:UP000006548RefSeq:NP_201390.1
SMR:Q9FHP1STRING:3702.AT5G65890.1SUPFAM:SSF55021TAIR:AT5G65890tair10-symbols:ACR1UniGene:At.1913UniProt:Q9FHP1
Coordinates (TAIR10) chr5:+:26355701..26357721
Molecular Weight (calculated) 52980.60 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.18
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEIAYQPRI DSEIESLVER INPPRVCVDN DSDPECTLIK VDSANKYGIL LDMVQVLADL DLVISKCYIS SDGEWFMDVF HVTDQLGNKL TDRSLILYIQ
101: QAICSSRTGG ITKEMQSNLK REVQQRHVST EHTAFEITGI NRPGLLSEIS AVLSDIGCHV TAAVAWTHHE RAAMVIYLED GFNGGPIIDP IRKAQVKDHL
201: DTVMEAHHIV GDVSHVVVRV VEAKGVPVGW AHTERRLHEL MYGEGDYENC FDCDCFGDRC DALWRGRCER IHVTIEACNG YSMVNVKCRD RPKLLFDTVC
301: ALKELQFVVF HAVAGAKGST AEQEYFIRKK NGGTLETEGQ RERLRHCLVA AISRRASQGL KLEIRTENKM GLLSDVTRVV RENGLSITRA EMCTQGEIAV
401: GSFYVTDVNG GETGPSEVEA VVRELGGAVV SAVKGVGMMP RRIGSTSDSV EQDKAKSSIG RMFWSKLERL STSIRSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)