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AT5G65840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G37240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZHIBeggNOG:KOG4498EMBL:AY099841EMBL:BT000333EMBL:CP002688EnsemblPlants:AT5G65840EnsemblPlants:AT5G65840.1
entrez:836713Gene3D:3.40.30.10GeneID:836713GO:GO:0009507GO:GO:0009570Gramene:AT5G65840.1hmmpanther:PTHR28630
hmmpanther:PTHR28630:SF4HOGENOM:HOG000240386InterPro:IPR012336InterPro:IPR032801KEGG:ath:AT5G65840OMA:REATKNYPANTHER:PTHR28630
Pfam:PF13911PhylomeDB:Q8L5Y8Proteomes:UP000006548RefSeq:NP_201385.2STRING:3702.AT5G65840.1SUPFAM:SSF52833TAIR:AT5G65840
UniGene:At.43518UniProt:Q8L5Y8
Coordinates (TAIR10) chr5:-:26344097..26346057
Molecular Weight (calculated) 29884.90 Da
IEP (calculated) 8.38
GRAVY (calculated) 0.02
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MILVSESPMA ILSLRSSSSL PLICSTISPL CSKPMLSQLP SNFSSSIASV PVTKLKSSYS SSVSPISRPR VVSARAATES FTDYREDIGE ILGDVSIFTA
101: SGQRVQFSDL WDQKDGIAAV VLLRHFGCVC CWELATALKE AKPRFDAAGV KLIAVGVGTP DKARILATRL PFPMECLYAD PERKAYDVLG LYFGLGRTFF
201: NPASTKVFSR FSEIREATKN YTIEATPEDR SSVLQQGGTF VFRGKKLLYG RKDEGTGDHP SLDDVINVCC KATVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)