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AT5G65810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21422118 (2011): Golgi
  • PMID:21422118 (2011): Golgi Golgi apparatus Golgi membrane
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEZPeggNOG:ENOG4111QN3EMBL:AK229026EMBL:BT033154
EMBL:CP002688EnsemblPlants:AT5G65810EnsemblPlants:AT5G65810.1entrez:836710
Gene3D:3.40.50.150GeneID:836710GO:GO:0000139GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0010394GO:GO:0016021
GO:GO:0040007GO:GO:0045488GO:GO:0045489Gramene:AT5G65810.1
hmmpanther:PTHR34208hmmpanther:PTHR34208:SF1HOGENOM:HOG000029119InterPro:IPR029063
KEGG:ath:AT5G65810OMA:GPGMFKSPhylomeDB:Q0WPN7Proteomes:UP000006548
RefSeq:NP_569020.1STRING:3702.AT5G65810.1SUPFAM:SSF53335TAIR:AT5G65810
TMHMM:TMhelixUniGene:At.7046UniProt:Q0WPN7
Coordinates (TAIR10) chr5:-:26337833..26339144
Molecular Weight (calculated) 28298.00 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.19
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRQVRRVG DSGSFPFVGA LHSKSRSSPL LSVCLVLVGA CLLIGYAYSG PGMFKSIREV SKITGDYSCT AEVQRAIPIL KSAYGDSMRK VLHVGPETCS
101: VVSSLLNEEE TEAWGVEPYD VEDADSNCKS LLHKGLVRVA DIKFPLPYRS KSFSLVIVSD ALDYLSPRYL NKTVPELARV ASDGVVLLAG NPGQQKAKGG
201: ELSKFGRPAK MRSSSWWIRF FSQTNLEENE AASKKFEQAA SKSSYKPACQ VFHLKPLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)