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AT5G65790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 68
Curator
Summary (TAIR10)
Encodes a putative MYB transcription factor.
Computational
Description (TAIR10)
myb domain protein 68 (MYB68); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 84 (TAIR:AT3G49690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB010075EMBL:AK227472
EMBL:AL021684EMBL:AY519647EMBL:BT005994EMBL:CP002688
EnsemblPlants:AT5G65790EnsemblPlants:AT5G65790.1entrez:836708Gene3D:1.10.10.60
GeneID:836708GO:GO:0003677GO:GO:0003700GO:GO:0006355
GO:GO:0009739GO:GO:0009751Gramene:AT5G65790.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF561IntAct:O49538InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G65790KO:K09422OMA:WFGSSNF
Pfam:PF00249Pfscan:PS51294PhylomeDB:O49538PIR:T05891
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_201380.1SMART:SM00717
SMR:O49538STRING:3702.AT5G65790.1SUPFAM:SSF46689TAIR:AT5G65790
tair10-symbols:ATMYB68tair10-symbols:MYB68UniGene:At.10916UniProt:O49538
Coordinates (TAIR10) chr5:+:26323035..26324385
Molecular Weight (calculated) 41844.00 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.73
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)