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AT5G65730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 6 (XTH6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to water deprivation; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G65730-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410IKHWEMBL:AB010075EMBL:AL021684
EMBL:AY044329EMBL:AY057564EMBL:AY084968EMBL:AY093983EMBL:CP002688EnsemblPlants:AT5G65730EnsemblPlants:AT5G65730.1
entrez:836702ExpressionAtlas:Q8LF99Gene3D:2.60.120.200GeneID:836702Genevisible:Q8LF99GO:GO:0004553GO:GO:0005618
GO:GO:0009414GO:GO:0010411GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555Gramene:AT5G65730.1
hmmpanther:PTHR31062hmmpanther:PTHR31062:SF48HOGENOM:HOG000236368InParanoid:Q8LF99InterPro:IPR000757InterPro:IPR008263InterPro:IPR010713
InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT5G65730KO:K08235OMA:QTNIFAHPaxDb:Q8LF99Pfam:PF00722
Pfam:PF06955Pfam:Q8LF99Pfscan:PS51762PhylomeDB:Q8LF99PIR:T05895PIRSF:PIRSF005604PRIDE:Q8LF99
PRO:PR:Q8LF99PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q8LF99Proteomes:UP000006548RefSeq:NP_569019.1scanprosite:PS01034
SMR:Q8LF99STRING:3702.AT5G65730.1SUPFAM:SSF49899TAIR:AT5G65730tair10-symbols:XTH6TMHMM:TMhelixUniGene:At.23387
UniProt:Q0WUU2UniProt:Q8LF99
Coordinates (TAIR10) chr5:+:26299080..26300290
Molecular Weight (calculated) 33693.80 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.41
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKIYSPSFP GTLCLCIFTL LTLMFIRVSA RPATFVEDFK AAWSESHIRQ MEDGKAIQLV LDQSTGCGFA SKRKYLFGRV SMKIKLIPGD SAGTVTAFYM
101: NSDTATVRDE LDFEFLGNRS GQPYSVQTNI FAHGKGDREQ RVNLWFDPSM DYHTYTILWS HKHIVFYVDD VPIREYKNNE AKNIAYPTSQ PMGVYSTLWE
201: ADDWATRGGL EKIDWSKAPF YAYYKDFDIE GCPVPGPTFC PSNPHNWWEG YAYQSLNAVE ARRYRWVRVN HMVYDYCTDR SRFPVPPPEC RA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)