suba logo
AT5G65700.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Computational
Description (TAIR10)
BARELY ANY MERISTEM 1 (BAM1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G65700-MONOMERBioCyc:ARA:GQT-1506-MONOMERBioGrid:21941EC:2.7.11.1eggNOG:COG0515eggNOG:COG4886eggNOG:ENOG410IERA
EMBL:AB010075EMBL:AK226485EMBL:AL021684EMBL:AY099814EMBL:BT008810EMBL:CP002688EMBL:FJ708816
EnsemblPlants:AT5G65700EnsemblPlants:AT5G65700.1EnsemblPlants:AT5G65700.2entrez:836699Gene3D:3.80.10.10GeneID:836699Genevisible:O49545
GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0010075GO:GO:0016021GO:GO:0030154GO:GO:0033612
GO:GO:0043621GO:GO:0048229GO:GO:0048437Gramene:AT5G65700.1Gramene:AT5G65700.2hmmpanther:PTHR27000hmmpanther:PTHR27000:SF49
HOGENOM:HOG000116551InParanoid:O49545InterPro:IPR000719InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013210InterPro:IPR025875InterPro:IPR032675iPTMnet:O49545KEGG:ath:AT5G65700OMA:PLTWELGPaxDb:O49545
Pfam:O49545Pfam:PF00069Pfam:PF00560Pfam:PF08263Pfam:PF12799Pfscan:PS50011PhylomeDB:O49545
PIR:T05898PRIDE:O49545PRO:PR:O49545PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:O49545Proteomes:UP000006548
RefSeq:NP_001190624.1RefSeq:NP_201371.1scanprosite:PS00108SMART:SM00220SMART:SM00369SMR:O49545STRING:3702.AT5G65700.1
SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G65700tair10-symbols:BAM1TMHMM:TMhelixUniGene:At.1921
UniProt:O49545
Coordinates (TAIR10) chr5:+:26281826..26284945
Molecular Weight (calculated) 109210.00 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.02
Length 1003 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKLFLLLLFL LHISHTFTAS RPISEFRALL SLKTSLTGAG DDKNSPLSSW KVSTSFCTWI GVTCDVSRRH VTSLDLSGLN LSGTLSPDVS HLRLLQNLSL
0101: AENLISGPIP PEISSLSGLR HLNLSNNVFN GSFPDEISSG LVNLRVLDVY NNNLTGDLPV SVTNLTQLRH LHLGGNYFAG KIPPSYGSWP VIEYLAVSGN
0201: ELVGKIPPEI GNLTTLRELY IGYYNAFEDG LPPEIGNLSE LVRFDGANCG LTGEIPPEIG KLQKLDTLFL QVNVFSGPLT WELGTLSSLK SMDLSNNMFT
0301: GEIPASFAEL KNLTLLNLFR NKLHGEIPEF IGDLPELEVL QLWENNFTGS IPQKLGENGK LNLVDLSSNK LTGTLPPNMC SGNKLETLIT LGNFLFGSIP
0401: DSLGKCESLT RIRMGENFLN GSIPKGLFGL PKLTQVELQD NYLSGELPVA GGVSVNLGQI SLSNNQLSGP LPPAIGNFTG VQKLLLDGNK FQGPIPSEVG
0501: KLQQLSKIDF SHNLFSGRIA PEISRCKLLT FVDLSRNELS GEIPNEITAM KILNYLNLSR NHLVGSIPGS ISSMQSLTSL DFSYNNLSGL VPGTGQFSYF
0601: NYTSFLGNPD LCGPYLGPCK DGVAKGGHQS HSKGPLSASM KLLLVLGLLV CSIAFAVVAI IKARSLKKAS ESRAWRLTAF QRLDFTCDDV LDSLKEDNII
0701: GKGGAGIVYK GVMPNGDLVA VKRLAAMSRG SSHDHGFNAE IQTLGRIRHR HIVRLLGFCS NHETNLLVYE YMPNGSLGEV LHGKKGGHLH WDTRYKIALE
0801: AAKGLCYLHH DCSPLIVHRD VKSNNILLDS NFEAHVADFG LAKFLQDSGT SECMSAIAGS YGYIAPEYAY TLKVDEKSDV YSFGVVLLEL VTGRKPVGEF
0901: GDGVDIVQWV RKMTDSNKDS VLKVLDPRLS SIPIHEVTHV FYVAMLCVEE QAVERPTMRE VVQILTEIPK LPPSKDQPMT ESAPESELSP KSGVQSPPDL
1001: LNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)