AT5G65685.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26273252..26275864 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52066.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQATANLPTI WNLSLRGSSS KVHIVNPRHR KSHALHCLRS EGHEEFDNSQ KSLGQSSITK EAKHKDIWNL FREAQKNIMI LNKQRLAAVD ELEQLKKDKE 101: ELLERINQLE AESQIVIKKD KSSLFWELLL RIDSMVINGL VNIEEASSMR KLVKEHEANI SVFPLDVLQQ GDAEILAELR RFTNKGKRNG LHVIHICTEM 201: APLVSVGPLA SYITGLSCAL QEEGYMVEVI LPKYSTLDLD EIEGLREIEA DAYSYFDGQL HANRIWNGVV SGIGVTLIQP VYYSSMFSRD KVYGYQDDFD 301: RFAYFSRASL DYIAKSGKQP DVLHIHNWQT AIVGPLFWDV FVNQGLEGTR ILLTCQDFDK GLVPPEKLEL CGLDPAELHR LDRLQDNTNP HFVNILKGGV 401: VYSNKVVIMS SSHSSIPGLE PTLAIHKDKL FFAPFGMDNS MEKDLCCDLH VSAYTSIKNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)