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AT5G65683.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW7ZeggNOG:ENOG411056HEMBL:AK228549EMBL:CP002688EnsemblPlants:AT5G65683EnsemblPlants:AT5G65683.1entrez:836695
Gene3D:3.30.40.10Gene3D:3.40.50.410GeneID:836695GO:GO:0008270Gramene:AT5G65683.1hmmpanther:PTHR10579hmmpanther:PTHR10579:SF59
InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083KEGG:ath:AT5G65683OMA:QTVKHAMPfam:PF00092Pfam:PF17123
Pfscan:PS50089Pfscan:PS50234PhylomeDB:Q0WQX9PROSITE:PS50089PROSITE:PS50234Proteomes:UP000006548RefSeq:NP_680467.1
SMART:SM00184SMART:SM00327SMR:Q0WQX9STRING:3702.AT5G65683.1SUPFAM:SSF53300SUPFAM:SSF57850TAIR:AT5G65683
UniGene:At.44174UniProt:Q0WQX9
Coordinates (TAIR10) chr5:+:26261472..26263704
Molecular Weight (calculated) 78583.40 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.41
Length 717 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFGWRKAFC TSVSSNQDKP QQHSSLHTTD PPIPTPRFRS KFGFLSNPST PRLRSRGGSG TGCRSSASTS VTIPSLPTSP KLHCRTTSNA TPRTSNSSSP
101: KFFSNPSSPK SSSSSSSQGG GGVSLLRATL LLNKSNSSRC AICLQRVNSN QSNSTAAIFT AECSHSFHLS CVNGLEDKRC PFCSAAWNHA PKSNYPAVNN
201: NFGSDPIRRP EIREIKTGKS LRVYNDDEPL AYSPVSLAQI NTIHESDEND DVEDDDDFPG FFRDSSITSD MVPSISGNLE VKLLPESAVV ETGKKKETHV
301: VIMKLKASPS PSSITDAIKA RRPSIDLVTV LDLSNGGANL QTVKHAMRSV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA KGRRSARRMV DALGGMETTG
401: GVGMSVNDAL KKAVKVVEDR REKNPSTSIF VLSDGQDQPE AVLKAKLNAT RIPFVVSTTR FSRPEIPVHS VYIASPGALL HAPLRDAFTE RIASLLNVTL
501: HNVKLNLSLV NGSHLTEISS VYSLTGRLEN FGSGSVIQVG DLFAEEEREF LVELKVPTSS SGSHQVMSVQ SSIVDQMTHQ PMTCPKEKRF LIPRPQSVRY
601: VSSSIERLRN LHSMCRAVAD SRRLIEREDL SGAYQVLTTA RSNASHSDDS LRSLEVELNE LSRIKPRNSI LNRTEDKPEQ LTPTSAWRAA EKLAKVAIMR
701: KHLNRVSDMH GLENARF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)