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AT5G65650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1195)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1195); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1195) (TAIR:AT4G36660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXRSeggNOG:ENOG4111D8WEMBL:AK175285EMBL:AK176717
EMBL:AY084793EMBL:BT002817EMBL:BT004447EMBL:CP002688
EnsemblPlants:AT5G65650EnsemblPlants:AT5G65650.1entrez:836691GeneID:836691
GO:GO:0016021Gramene:AT5G65650.1hmmpanther:PTHR34358hmmpanther:PTHR34358:SF2
HOGENOM:HOG000240138InterPro:IPR010608KEGG:ath:AT5G65650OMA:HRPEVEQ
Pfam:PF06708PhylomeDB:Q8LFK6Proteomes:UP000006548RefSeq:NP_569015.1
TAIR:AT5G65650TMHMM:TMhelixUniGene:At.24007UniProt:Q8LFK6
Coordinates (TAIR10) chr5:+:26239588..26241195
Molecular Weight (calculated) 20940.10 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.26
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDGDSLPIS TSSVAATTVT GKKETGYSAL FSKGRYKFWA LAAILLLAFW SMLTGTVNLR WSAGNINHFT DDLVFPIHED LDVLEMEERE KVVKHMWDVY
101: NNGRRIRLPR FWQEAFEAAY EELTSDVPDV VEAAISEIAR MSIRSIVIDP PPLHSTNVRE LTKTLKLADK GRATQISKPS SRRLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)