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AT5G65640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta HLH protein 93
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21932eggNOG:ENOG410IW1FeggNOG:ENOG410YB4FEMBL:AB026639
EMBL:AF488621EMBL:AK229018EMBL:AY085134EMBL:BT025665
EMBL:CP002688EnsemblPlants:AT5G65640EnsemblPlants:AT5G65640.1entrez:836690
Gene3D:4.10.280.10GeneID:836690Genevisible:Q9LSL1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007275
hmmpanther:PTHR31945hmmpanther:PTHR31945:SF6HOGENOM:HOG000029066InParanoid:Q9LSL1
InterPro:IPR011598KEGG:ath:AT5G65640ncoils:CoilOMA:PLMESDQ
PaxDb:Q9LSL1Pfam:PF00010Pfam:Q9LSL1Pfscan:PS50888
PhylomeDB:Q9LSL1PRIDE:Q9LSL1PRO:PR:Q9LSL1PROSITE:PS50888
ProteinModelPortal:Q9LSL1Proteomes:UP000006548RefSeq:NP_001078801.1RefSeq:NP_569014.1
SMART:SM00353SMR:Q9LSL1STRING:3702.AT5G65640.1SUPFAM:SSF47459
TAIR:AT5G65640tair10-symbols:bHLH093UniGene:At.28897UniProt:Q9LSL1
Coordinates (TAIR10) chr5:+:26237137..26238904
Molecular Weight (calculated) 39486.30 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.62
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)