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AT5G65490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR07eggNOG:KOG2406EMBL:AB026638EMBL:AY080838EMBL:CP002688EnsemblPlants:AT5G65490EnsemblPlants:AT5G65490.1
entrez:836674GeneID:836674Genevisible:Q9LSM5Gramene:AT5G65490.1hmmpanther:PTHR13060HOGENOM:HOG000029899InParanoid:Q9LSM5
IntAct:Q9LSM5InterPro:IPR010770KEGG:ath:AT5G65490MINT:MINT-6822845OMA:SIHRQIVPANTHER:PTHR13060PaxDb:Q9LSM5
Pfam:PF07093Pfam:Q9LSM5PhylomeDB:Q9LSM5PRIDE:Q9LSM5PRO:PR:Q9LSM5ProteinModelPortal:Q9LSM5Proteomes:UP000006548
RefSeq:NP_201352.1STRING:3702.AT5G65490.1TAIR:AT5G65490UniGene:At.43863UniGene:At.49228UniProt:Q9LSM5
Coordinates (TAIR10) chr5:-:26178003..26180309
Molecular Weight (calculated) 73165.10 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.72
Length 643 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKPSSSPFF SETTSRLQDE TVFFSLFPDS SLSSAALQSL HLEIIDFVSP FTSPYIWQHE PFSLSIALSS SCACTNTAIP HLHGKLKYGD NLEDEWFAVF
101: LLFRISAAFP SNSIRVWDTD GEFLLIEAAF HLPRWLNPET SLNRVFIRGG DLHIVPRSRL PDPSLVASLR FLIERGNESR ASDSVQSALK NRISDYPERA
201: WRNMHRVRVR VPVSVAQVIR HEPFLISLAV EGFYDRDMDS MKHAAKMEKF LSKGREEKLV LVLVKMSRAM YGQLVQQKFQ APNCYPMPSV SDRDAFSEAE
301: LGMKIACGME MMYQQRKKEG EDGKGISWSK YKDNLEKYGY FEGLLSGSKE YKRLMENAEE YHQKSSSFSR TRDIMSAPVR RIDEILALPY SEDDFKGQEV
401: PASDNDSWLY DGEDELNSVL QERQKEMEFY NSKKERKNKG KEKQEAGSSS DANMNNFDLG DISKSMQQFM HKVSSYKGAE VPENRDFKEV SIDVDRFMKD
501: IESMLGSQGR DEQADDDSDG SEGSSMDMDF DDVEDDSEGE ESNEDAKESF EESYYGAMNE ELKNSTLEKS FENVNQQHSS KQNEESSKTR DEKDDEFTPV
601: DADFNLVKNL LESYSSQQGL PGPASNLLGL MGLQLPKDSG DKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)