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AT5G65470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.397
plasma membrane 0.378
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT4G24530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKX3eggNOG:ENOG4111FD0EMBL:AK226986EMBL:CP002688EnsemblPlants:AT5G65470EnsemblPlants:AT5G65470.1entrez:836672
GeneID:836672GO:GO:0016757Gramene:AT5G65470.1HOGENOM:HOG000240134InterPro:IPR019378InterPro:IPR024709KEGG:00514+2.4.1.221
KEGG:ath:AT5G65470OMA:VHASAKWPfam:PF10250PhylomeDB:Q0WUZ5PIRSF:PIRSF009360Proteomes:UP000006548RefSeq:NP_201350.2
STRING:3702.AT5G65470.1TAIR:AT5G65470UniGene:At.22388unipathway:UPA00378UniProt:Q0WUZ5
Coordinates (TAIR10) chr5:+:26172432..26174904
Molecular Weight (calculated) 57071.20 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.33
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPYDAKDRR WILSMFFFVV LFCNNVSTSS SSSEVITIKP RHLSLLKSAL QRSSGEQSDL WRPLTDQGWS PCIDLGNSPS LPDKTAGYVQ VFLDGGLNQQ
101: RMGICDAVAV AKILNATLVI PYLEVNPVWQ DSSSFVDIFD VDHFIDSLKD DIRVVRELPD EYSWSTREYY GTAVRETRVK TAPVHASANW YIENVSPVLQ
201: SYGIAAISPF SHRLSFDHLP AEIQRLRCKV NFQALRFVPH ITSLGDALVS RLRNPSWRSN KEQKNVDHLG DMTNPHRRQE PGKFAVLHLR FDKDMAAHSA
301: CDFGGGKAEK LSLAKYRQMI WQGRVLNSQF TDEELRSQGR CPLTPEEMGL LLAAFGFDNN TRLYLASHKV YGGEARISTL RQVFPRMEDK RSLASSEERA
401: RIKGKASLLA ALDYYVSMHS DIFISASPGN MHNALVGHRT FENLKTIRPN MALIGQLFLN KSITWVDFQQ ALGEGHVNRQ GQIRLRKPKQ SIYTYPAPDC
501: MCHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)