suba logo
AT5G65440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.910
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AY075638EMBL:AY133581EMBL:CP002688EnsemblPlants:AT5G65440EnsemblPlants:AT5G65440.1entrez:836669ExpressionAtlas:Q8RY57
GeneID:836669Gramene:AT5G65440.1hmmpanther:PTHR31110hmmpanther:PTHR31110:SF4IntAct:Q8RY57PhylomeDB:Q8RY57Proteomes:UP000006548
RefSeq:NP_201347.2TAIR:AT5G65440UniGene:At.43476UniProt:Q8RY57
Coordinates (TAIR10) chr5:+:26152015..26156896
Molecular Weight (calculated) 118188.00 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.31
Length 1050 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFREAGLRNI GEDVDSRWTI GNRKLDAKSV PNANSGHGFG FRSAPPLSSS IKPVRAQNGL GRNGAKVFGA ADDLSDSATS TEVSYEAEAC GVRNNISSHN
0101: EFERRNVEAG TSGRTLNGTS TSTSSLPRFP TFHASEQGPW SAMIAYEACV RLCLHSWSTD SVSEASYFLN NECTIMRNAF SLQRFFLHSE EELLGKGPSE
0201: LVTETSVPKS KKTIGKIKLQ VRRIKMGLDP PPGCNIATLT VSKEKLEVVR HHIVELNSTL SSGWKAARKV HVTPQVPLNG SLSRQSLAYM QAAARYLKQV
0301: SKAVKKEIVT SHTGPQTYEA VQETYSCSLR LKSSPEDDQI KTQPGSGETF IFLPDSLGDD LIIEVRDSKA QLLGRVVAQL AAMADDPSEK LRWLPIYHEP
0401: EHELIGRIQL TFSYSSSLDE KTKCGLVAET SAYDLVLEVA MKAERFQRRN LLFKGPWHWM ITRFASYYGV SDAYTRLRYL SYVMDVASPT KDCLDLIHDF
0501: LFPIIMTSNH RAVLSHQENR LLGEIDEQIQ QILASAFENY KSLAELSFSG MKDVFESATG TPAPAIESAV KLYGLLNDVL TPEAQLKLCR YFQAASKKRS
0601: RRHLLDTNDL LNNRSEGVPV DPMVLAASYQ KMKSLILSLK NEISTDIAIH DCNVLPSFID LPNHSAAIYS VDVCNRLREF LLVWPPPGPS PAVVDLVITT
0701: ADFQRDLSSW HINPIKGGVN AKELFYSYIT TWIEEKRRVL YELCKLETSK ACVEIPGLTS PFVDEMYERL NGTLDEYDII IRRWPEYAIS LEKVVADSEK
0801: AIVEAMEKQF TEILSPLKES KIFGLKIVKK FTKGTPNPYS VPKELGVLLN SMKRVLDILR PSIENRFKSW NSYIPDGENR VLGERLSEVT VLLRSKFRSY
0901: MQALVEKLAE NTRIQSHMKL KTIIHDLRET TAEPDVRNRM TSLKDLLDKT IDHLHGVFLP DVFVAICRGI WDRMGQDVLR LLEDRKDNVT WHKGPRIAVS
1001: VLDEIFATQM QSLLGNGLKP EHLEPPRSMM ELRSMLCKDS TDYREGGYNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)