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AT5G65420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.608
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At5g65420
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYCLIN D4;1
Curator
Summary (TAIR10)
Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.
Computational
Description (TAIR10)
CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21909eggNOG:ENOG410XRKCeggNOG:KOG0656EMBL:AB011479
EMBL:AJ131636EMBL:AY084386EMBL:CP002688EnsemblPlants:AT5G65420
EnsemblPlants:AT5G65420.1entrez:836667ExpressionAtlas:Q8LGA1Gene3D:1.10.472.10
GeneID:836667Genevisible:Q8LGA1GO:GO:0005634GO:GO:0007049
GO:GO:0051301hmmpanther:PTHR10177hmmpanther:PTHR10177:SF213HOGENOM:HOG000242458
InParanoid:Q8LGA1IntAct:Q8LGA1InterPro:IPR004367InterPro:IPR006671
InterPro:IPR013763PaxDb:Q8LGA1Pfam:PF00134Pfam:PF02984
Pfam:Q8LGA1PhylomeDB:Q8LGA1PRIDE:Q8LGA1PRO:PR:Q8LGA1
PROSITE:PS00292ProteinModelPortal:Q8LGA1Proteomes:UP000006548RefSeq:NP_201345.1
scanprosite:PS00292SMART:SM00385SMART:SM01332SMR:Q8LGA1
STRING:3702.AT5G65420.3SUPFAM:SSF47954TAIR:AT5G65420tair10-symbols:CYCD4;1
UniGene:At.415UniProt:Q8LGA1
Coordinates (TAIR10) chr5:-:26141592..26143750
Molecular Weight (calculated) 34717.70 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.09
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)