suba logo
AT5G65410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 25
Curator
Summary (TAIR10)
Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.
Computational
Description (TAIR10)
homeobox protein 25 (HB25); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Zinc finger, C2H2-type (InterPro:IPR007087), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 22 (TAIR:AT4G24660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21908eggNOG:ENOG410IVYHeggNOG:ENOG410YEN7EMBL:AB011479EMBL:BT002385EMBL:BT006304EMBL:CP002688
EnsemblPlants:AT5G65410EnsemblPlants:AT5G65410.1entrez:836666EvolutionaryTrace:Q9FKP8Gene3D:1.10.10.60GeneID:836666Genevisible:Q9FKP8
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010371GO:GO:0010431GO:GO:0042803
GO:GO:0046872Gramene:AT5G65410.1hmmpanther:PTHR31948hmmpanther:PTHR31948:SF20HOGENOM:HOG000238105InParanoid:Q9FKP8IntAct:Q9FKP8
InterPro:IPR006455InterPro:IPR006456InterPro:IPR007087InterPro:IPR009057iPTMnet:Q9FKP8KEGG:ath:AT5G65410MINT:MINT-1366403
OMA:FMPAGIEPaxDb:Q9FKP8PDB:1WH5PDBsum:1WH5Pfam:PF04770Pfam:Q9FKP8Pfscan:PS51523
PhylomeDB:Q9FKP8PRIDE:Q9FKP8PRO:PR:Q9FKP8ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9FKP8Proteomes:UP000006548
RefSeq:NP_201344.1scanprosite:PS00028SMR:Q9FKP8STRING:3702.AT5G65410.1SUPFAM:SSF46689TAIR:AT5G65410tair10-symbols:ATHB25
tair10-symbols:HB25tair10-symbols:ZFHD2tair10-symbols:ZHD1TIGRfam:TIGR01565TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566
UniGene:At.43744UniProt:Q9FKP8
Coordinates (TAIR10) chr5:+:26136179..26137018
Molecular Weight (calculated) 31100.20 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.99
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)