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AT5G65380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.743
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G44050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AB011479EMBL:AF375456EMBL:AY143960EMBL:CP002688EnsemblPlants:AT5G65380
EnsemblPlants:AT5G65380.1entrez:836663GeneID:836663Genevisible:Q9FKQ1GO:GO:0015238GO:GO:0015297GO:GO:0016021
Gramene:AT5G65380.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF122HOGENOM:HOG000177025InParanoid:Q9FKQ1InterPro:IPR002528KEGG:ath:AT5G65380
KO:K03327ncoils:CoilOMA:EAFAGMWPaxDb:Q9FKQ1Pfam:PF01554PhylomeDB:Q9FKQ1PRIDE:Q9FKQ1
ProteinModelPortal:Q9FKQ1Proteomes:UP000006548RefSeq:NP_201341.1SMR:Q9FKQ1STRING:3702.AT5G65380.1TAIR:AT5G65380TIGRfam:TIGR00797
TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.28742UniProt:Q9FKQ1
Coordinates (TAIR10) chr5:-:26123241..26126352
Molecular Weight (calculated) 52974.80 Da
IEP (calculated) 8.00
GRAVY (calculated) 0.72
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGGDGEEGS ESRVALLKSP HTAEEDGEGL KDRILVETKK LWQIVGPAIF SRVTTYSMLV ITQAFAGHLG DLELAAISIV NNVTVGFNFG LLLGMASALE
101: TLCGQAFGAK KYHMLGVYMQ RSWIVLFFCC VLLLPTYIFT TPVLKFLGQP DDIAELSGVV AIWVIPLHFA FTLSFPLQRF LQCQLKNRVT AYAAAVALVV
201: HILVCWLFVD GLKLGVVGTV ATISISWWVN VLILLVYSTC GGCPLTWTGL SSEALTGLWE FLKLSASSGV MLCLENWYYR ILIIMTGNLQ NARIAVDSLS
301: ICMAINGWEM MIPLAFFAGT GVRVANELGA GNGKGARFAT IVSVTQSLII GLFFWVLIML LHNQIAWIFS SSVAVLDAVN KLSLLLAFTV LLNSVQPVLS
401: GVAVGSGWQS YVAYINLGCY YCIGVPLGFL MGWGFKLGVM GIWGGMIFGG TAVQTMILSF ITMRCDWEKE AQKASARINK WSNTIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)