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AT5G65330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 78
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 78 (AGL78); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB011479EMBL:AY141224EMBL:CP002688EnsemblPlants:AT5G65330EnsemblPlants:AT5G65330.1
entrez:836658GeneID:836658GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT5G65330.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF240HOGENOM:HOG000064579IntAct:Q9FKQ5InterPro:IPR002100KEGG:ath:AT5G65330ncoils:Coil
OMA:WPKERETPfam:PF00319Pfscan:PS50066PhylomeDB:Q9FKQ5PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_201336.1
SMART:SM00432STRING:3702.AT5G65330.1SUPFAM:SSF55455TAIR:AT5G65330tair10-symbols:AGL78UniGene:At.28914UniProt:Q9FKQ5
Coordinates (TAIR10) chr5:+:26110326..26111351
Molecular Weight (calculated) 38891.60 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.76
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)