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AT5G65320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS3JeggNOG:ENOG4111ASKEMBL:AB011479EMBL:AF488625EMBL:AY070095EMBL:AY096704EMBL:CP002688
EnsemblPlants:AT5G65320EnsemblPlants:AT5G65320.1entrez:836657Gene3D:4.10.280.10GeneID:836657Genevisible:Q9FKQ6GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT5G65320.1hmmpanther:PTHR11969hmmpanther:PTHR11969:SF26
HOGENOM:HOG000238962InParanoid:Q9FKQ6InterPro:IPR011598KEGG:ath:AT5G65320ncoils:CoilOMA:MNHFLSIPaxDb:Q9FKQ6
Pfam:PF00010Pfam:Q9FKQ6Pfscan:PS50888PhylomeDB:Q9FKQ6PRIDE:Q9FKQ6PRO:PR:Q9FKQ6PROSITE:PS50888
ProteinModelPortal:Q9FKQ6Proteomes:UP000006548RefSeq:NP_201335.1SMART:SM00353SMR:Q9FKQ6SUPFAM:SSF47459TAIR:AT5G65320
UniGene:At.28395UniProt:Q9FKQ6
Coordinates (TAIR10) chr5:-:26107368..26108640
Molecular Weight (calculated) 33763.10 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.50
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MMFQQDYPHG FSLVETSLSY EMLDYFQNIV VSNSEDVASQ QNSISSSSYS SATLSCSITE QKSHLTEKLS PLRERYGCGD FLSRKRRRRS EKTIVDKENQ
101: RMNHIAVERN RRKQMNHFLS ILKSMMPLSY SQPNDQASII EGTISYLKKL EQRLQSLEAQ LKATKLNQSP NIFSDFFMFP QYSTATATAT ATASSSSSSH
201: HHHKRLEVVA DVEVTMVERH ANIKVLTKTQ PRLLFKIINE FNSLGLSTLH LNLTTSKDMS LFTFSVKVEA DCQLTPSGNE VANTVHEVVR RVHKER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)