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AT5G65310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox protein 5
Curator
Summary (TAIR10)
Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.
Computational
Description (TAIR10)
homeobox protein 5 (HB5); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of transcription, abscisic acid mediated signaling pathway, regulation of abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21898eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AB011479EMBL:AF325054EMBL:AY074293EMBL:AY091340
EMBL:CP002688EMBL:X67033EnsemblPlants:AT5G65310EnsemblPlants:AT5G65310.1entrez:836656ExpressionAtlas:P46667Gene3D:1.10.10.60
GeneID:836656Genevisible:P46667GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009737GO:GO:0009738
GO:GO:0042803GO:GO:0043565GO:GO:0045893hmmpanther:PTHR24326hmmpanther:PTHR24326:SF196HOGENOM:HOG000006025InParanoid:P46667
InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970ncoils:CoilOMA:MANNEVL
PaxDb:P46667Pfam:P46667Pfam:PF00046Pfam:PF02183Pfscan:PS50071PhylomeDB:P46667PIR:S47135
PRIDE:P46667PRINTS:PR00031PRO:PR:P46667PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P46667Proteomes:UP000006548
RefSeq:NP_201334.1scanprosite:PS00027SMART:SM00389SMR:P46667STRING:3702.AT5G65310.1SUPFAM:SSF46689TAIR:AT5G65310
tair10-symbols:ATHB-5tair10-symbols:ATHB5tair10-symbols:HB5UniGene:At.19698UniGene:At.67842UniProt:P46667
Coordinates (TAIR10) chr5:-:26102457..26104217
Molecular Weight (calculated) 34792.40 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.71
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRSRGSSDS LSGFLPIRHS TTDKQISPRP TTTGFLYSGA GDYSQMFDAL EDDGSLEDLG GVGHASSTAA EKKRRLGVEQ VKALEKNFEI DNKLEPERKV
101: KLAQELGLQP RQVAIWFQNR RARWKTKQLE RDYGVLKSNF DALKRNRDSL QRDNDSLLGQ IKELKAKLNV EGVKGIEENG ALKAVEANQS VMANNEVLEL
201: SHRSPSPPPH IPTDAPTSEL AFEMFSIFPR TENFRDDPAD SSDSSAVLNE EYSPNTVEAA GAVAATTVEM STMGCFSQFV KMEEHEDLFS GEEACKLFAD
301: NEQWYCSDQW NS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)