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AT5G65290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.930
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LMBR1-like membrane protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LMBR1-like membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8PeggNOG:KOG2296EMBL:AB011479EMBL:AK228888EMBL:CP002688EnsemblPlants:AT5G65290EnsemblPlants:AT5G65290.1
entrez:836654ExpressionAtlas:Q9FKQ8GeneID:836654GO:GO:0016021Gramene:AT5G65290.1hmmpanther:PTHR21355hmmpanther:PTHR21355:SF0
HOGENOM:HOG000239507InterPro:IPR006876ncoils:CoilOMA:ANGWKFVPfam:PF04791PhylomeDB:Q9FKQ8Proteomes:UP000006548
RefSeq:NP_201332.1TAIR:AT5G65290TMHMM:TMhelixUniGene:At.28915UniGene:At.67897UniProt:Q9FKQ8
Coordinates (TAIR10) chr5:+:26089814..26094337
Molecular Weight (calculated) 83172.60 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.05
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVFYLISLP LTLGLVVFTL RYFAGPEIPR YVLITVGYTW FCSVSVIILA PADIWTTLSL QPDHPENGAI SFLWSWSYWS TFLLTWAVVP LIQGFEDAGD
101: FTVSERLKTS VHVNLVFYLV LGFIGLLGLI LLIMMHRNWT GSILGYAMAC SNTFGLVTGA FLLGFGLSEI PKTLWKNADW TTRQKVLSHK IAKIAVKLDN
201: AHQELSNAIV VAQATSTQMS KRDPMRPYMN VIDAMLAKMF REDPSFKPQG GQLGENDMDY DTDEKSMATL RRHLRNAKDE YYRYKSEYLT YVTEALVLED
301: TMKNYERRDA TGWKYISSFR ATRTGKMGNL LDSLEFMWRC ILKKQIQMVL AVVMGIMSAA ILLAEATLLL SKLDLSLFSI LISSVKSDEL LVQAFAFVPL
401: VYMCVCTYYS LFKIGMLMIY SLTPRQTSSV NLLMICSMIA RYAPPISYNF INLIQLHSET IFEKKMGRID DAVPVFGQRF NEIYPLIMVI YTLLVASNFF
501: DRIFNYFGSW KRFRFQTETE DTDGFDPSGL MILKKERTWL EEGQKVGEHV LPLARNFNDV DIEPGSNFSE NSSVEMKMSS SYDIDTLKGS SSKDDMSRKY
601: GSAREAITNK YAAIREQQNK HSPSSMTKPE NMASAKVSLL ETDNSGPSNG QGSGEPSSRL ASTWRNMKLG IQSFKENVAT KKFLPLRQSP ETTALTSTRV
701: VTSSVPQSLD EIFQRLKNRS VEHSPYLDDD DEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)