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AT5G65270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A4A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:AB013395EMBL:AY045947
EMBL:AY079309EMBL:AY087004EMBL:CP002688EnsemblPlants:AT5G65270
EnsemblPlants:AT5G65270.1entrez:836652Gene3D:3.40.50.300GeneID:836652
Genevisible:Q9FJN8GO:GO:0005525GO:GO:0005768GO:GO:0005886
GO:GO:0007264GO:GO:0015031GO:GO:0016020GO:GO:0042546
Gramene:AT5G65270.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF562HOGENOM:HOG000233968
InParanoid:Q9FJN8InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT5G65270KO:K07904OMA:YARDEFSPaxDb:Q9FJN8
Pfam:PF00071Pfam:Q9FJN8Pfscan:PS51419PhylomeDB:Q9FJN8
PRIDE:Q9FJN8PRO:PR:Q9FJN8PROSITE:PS51419ProteinModelPortal:Q9FJN8
Proteomes:UP000006548RefSeq:NP_201330.1SMR:Q9FJN8STRING:3702.AT5G65270.1
SUPFAM:SSF52540TAIR:AT5G65270tair10-symbols:AtRABA4atair10-symbols:RABA4a
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.9298UniProt:Q9FJN8
Coordinates (TAIR10) chr5:+:26083437..26084550
Molecular Weight (calculated) 24843.40 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.26
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)