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AT5G65210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : bZIP transcription factor family protein
Curator
Summary (TAIR10)
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational
Description (TAIR10)
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKSNeggNOG:ENOG410YEGWEMBL:AK317142EMBL:AK317488EnsemblPlants:AT5G65210EnsemblPlants:AT5G65210.1EnsemblPlants:AT5G65210.2
EnsemblPlants:AT5G65210.3EnsemblPlants:AT5G65210.4EnsemblPlants:AT5G65210.5entrez:836646ExpressionAtlas:B9DGG1GeneID:836646GO:GO:0003700
GO:GO:0006351GO:GO:0043565Gramene:AT5G65210.1Gramene:AT5G65210.2Gramene:AT5G65210.3Gramene:AT5G65210.4Gramene:AT5G65210.5
hmmpanther:PTHR22952hmmpanther:PTHR22952:SF180InterPro:IPR004827InterPro:IPR025422KEGG:ath:AT5G65210KO:K14431ncoils:Coil
OMA:YFELFRMPfam:PF00170Pfam:PF14144Pfam:Q39237Pfscan:PS50217PhylomeDB:B9DGG1PROSITE:PS00036
PROSITE:PS50217RefSeq:NP_001032147.1RefSeq:NP_001032148.1RefSeq:NP_001032149.1RefSeq:NP_201324.1RefSeq:NP_851273.1scanprosite:PS00036
SMART:SM00338SMR:B9DGG1STRING:3702.AT5G65210.1SUPFAM:SSF57959TAIR:AT5G65210tair10-symbols:TGA1UniGene:At.20818
UniProt:B9DGG1UniProt:Q39237
Coordinates (TAIR10) chr5:+:26059031..26060749
Molecular Weight (calculated) 42066.00 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.52
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)