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AT5G65160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G10090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG1124EMBL:AB013395EMBL:BT015361EMBL:BT015891EMBL:CP002688EnsemblPlants:AT5G65160
EnsemblPlants:AT5G65160.1entrez:836639Gene3D:1.25.40.10GeneID:836639Gramene:AT5G65160.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF358
HOGENOM:HOG000237654InterPro:IPR011990InterPro:IPR013026InterPro:IPR013105InterPro:IPR019734KEGG:ath:AT5G65160OMA:WNGLITE
Pfam:PF07719Pfam:PF13414Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9FJQ0PROSITE:PS50005PROSITE:PS50293
Proteomes:UP000006548RefSeq:NP_201320.1SMART:SM00028SMR:Q9FJQ0STRING:3702.AT5G65160.1SUPFAM:SSF48452TAIR:AT5G65160
tair10-symbols:TPR14UniGene:At.28917UniProt:Q9FJQ0
Coordinates (TAIR10) chr5:-:26031457..26033668
Molecular Weight (calculated) 65020.10 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.70
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)