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AT5G65140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: response to cadmium ion, trehalose biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G10100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.12eggNOG:COG1877eggNOG:ENOG410IMM9EMBL:AB013395
EMBL:AK221501EMBL:BT020466EMBL:BT020519EMBL:CP002688
EnsemblPlants:AT5G65140EnsemblPlants:AT5G65140.1entrez:836638ExpressionAtlas:Q5HZ05
Gene3D:3.40.50.1000GeneID:836638Genevisible:Q5HZ05GO:GO:0004805
GO:GO:0005634GO:GO:0005730GO:GO:0005992GO:GO:0046686
gramene_pathway:3.1.3.12gramene_pathway:TRESYN-PWYhmmpanther:PTHR10788hmmpanther:PTHR10788:SF19
HOGENOM:HOG000239289InParanoid:Q5HZ05InterPro:IPR003337InterPro:IPR006379
InterPro:IPR023214iPTMnet:Q5HZ05OMA:IAVRRKCPaxDb:Q5HZ05
Pfam:PF02358Pfam:Q5HZ05PhylomeDB:Q5HZ05PRIDE:Q5HZ05
PRO:PR:Q5HZ05ProteinModelPortal:Q5HZ05Proteomes:UP000006548RefSeq:NP_201319.2
STRING:3702.AT5G65140.1SUPFAM:SSF56784TAIR:AT5G65140tair10-symbols:TPPJ
TIGRfam:TIGR00685TIGRfam:TIGR01484TIGRFAMs:TIGR00685TIGRFAMs:TIGR01484
UniGene:At.28918UniGene:At.64813UniPathway:UPA00299UniProt:Q5HZ05
Coordinates (TAIR10) chr5:-:26019878..26022077
Molecular Weight (calculated) 41760.30 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.41
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSQNVVVSD AKTGIITVST VSNSSVFTPT AQKPPTAPGY ISVSKKKLLK NLEINGADQS QRLNSWVDSM RASSPTHLKS LSSFSSEEEH NSWIKRHPSA
101: LNMFERIIEE ARGKQIVMFL DYDGTLSPIV DDPDRAFMTS KMRRTVKKMA KCFPTSIVTG RCIDKVYSFV KLAELYYAGS HGMDIKGPTK GFSRYNKDKP
201: SVLYQPAGDF LPMIDEVYKQ LVEKTKSTPG AKVENNKFCL SVHFRCVDEK KWSELASKVR SVVKNYPTLK LSQGRKVFEI RPIIKWNKGK ALEFLLESLG
301: FENCNDVFPI YIGDDKTDED AFKLLRGRGQ GFGILVSKFP KDTSASYSLQ DPPEVMNFLG RLVEWKQMQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)