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AT5G64990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog H1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog H1A (RABH1a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPBIeggNOG:KOG0094EMBL:AB019236EMBL:CP002688
EnsemblPlants:AT5G64990EnsemblPlants:AT5G64990.1entrez:836623ExpressionAtlas:Q9LV79
Gene3D:3.40.50.300GeneID:836623Genevisible:Q9LV79GO:GO:0000139
GO:GO:0005525GO:GO:0007264GO:GO:0015031GO:GO:0016192
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF474HOGENOM:HOG000233968InParanoid:Q9LV79
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417PaxDb:Q9LV79
Pfam:PF00071Pfam:Q9LV79Pfscan:PS51419PhylomeDB:Q9LV79
PRIDE:Q9LV79PRO:PR:Q9LV79PROSITE:PS51419ProteinModelPortal:Q9LV79
Proteomes:UP000006548RefSeq:NP_201304.1SMR:Q9LV79STRING:3702.AT5G64990.2
SUPFAM:SSF52540TAIR:AT5G64990tair10-symbols:AtRABH1atair10-symbols:RABH1a
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.55701UniProt:Q9LV79
Coordinates (TAIR10) chr5:-:25963562..25964792
Molecular Weight (calculated) 23121.50 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.25
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDLGKGYKL VFLGDQGVGK TSIITCFMYG KFDTSYQATI GIDFLSKTTR YEDRTFRLQL WDTAGQERFK SLVPSYIRDS SVAVIVYDVA SKQSFINTSK
101: WIEEVRAERG SYVIIVLVGN KTDLVNKRQV SIEEGENKAR EFGALFMETS AKAGFNIKPL FCKITSALQG NEAVSWTKQE DLVDVNLKPL MFSSQANHQQ
201: ESNCSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)