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AT5G64950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AB019236EMBL:CP002688
EnsemblPlants:AT5G64950EnsemblPlants:AT5G64950.1entrez:836619GeneID:836619
GO:GO:0003690GO:GO:0005739GO:GO:0006355Gramene:AT5G64950.1
hmmpanther:PTHR13068hmmpanther:PTHR13068:SF18InterPro:IPR003690KEGG:ath:AT5G64950
KO:K15032OMA:IVAPKHEPfam:PF02536PhylomeDB:Q9LV83
Proteomes:UP000006548RefSeq:NP_201300.1SMART:SM00733SMR:Q9LV83
STRING:3702.AT5G64950.1TAIR:AT5G64950UniGene:At.28929UniProt:Q9LV83
Coordinates (TAIR10) chr5:+:25953887..25955062
Molecular Weight (calculated) 44699.30 Da
IEP (calculated) 10.24
GRAVY (calculated) -0.03
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MQFLASLVSN SRKFGRRWDR ALSLHHFSSN ATPASISNPA FVEFLRDNGF QKPLAIAIAM RYPNLKSLEQ PRSVIQMLKS YSFSDTQIQK SIRVHPRMMF
101: YNVEKILEPK LRFFKDIGFT GSGLGKFVSQ NSSVVGVSLV KKLIPTVEIL KSIVAPKHED LPVILSRCGW LLLSRDPNLF LLPNISYLET CGIVGSQLAS
201: LLRRQPRIFN LSEEKLRGYV SRALDLGFTL NSRMLVHAVI SLSSLSEKTF DRKVKLFMAN GFSEDEITDI IRRSPGLIRC SEDKLTLGFE FYLKRMGLER
301: EALAKRPCVL SYNLEKRVIP RLKVLQILRE KGLLLKEEKK KKNMVGIVEM TEEAFLEKYV VRFGDEIAEE LLVAYKCVCL VDETLLDRIK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)